Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006408.1 Hibiscus syriacus cultivar Beakdansim tig00015453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49620

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1992--2035
21
2.1
21
86
0
61
50
15
6
27
1.70
4189--4226
15
2.6
15
95
4
69
50
10
26
13
1.73
4200--4233
15
2.3
15
89
0
50
50
17
17
14
1.79
9934--9967
14
2.5
14
95
4
61
35
0
5
58
1.22
11606--11630
13
1.9
13
100
0
50
0
40
0
60
0.97
13768--13840
18
3.9
18
82
7
101
19
20
31
28
1.97
13768--13841
38
1.9
38
91
0
121
20
20
31
28
1.97
19270--19321
2
26.0
2
92
0
86
46
1
0
51
1.12
19726--19782
30
1.9
30
82
7
71
24
3
17
54
1.59
27326--27578
41
6.0
41
84
8
310
20
20
22
36
1.95
27415--27574
21
7.8
21
76
4
164
20
18
23
36
1.95
27440--27608
21
8.1
20
73
9
142
16
20
23
39
1.92
27325--27596
82
3.2
83
86
7
343
20
20
23
36
1.95
27568--27641
22
3.5
21
74
10
80
14
18
22
43
1.87
27587--27652
19
3.3
19
72
12
69
18
19
21
40
1.91
27974--28016
6
7.5
6
92
2
63
0
16
51
32
1.45
28138--28292
20
7.6
20
73
4
130
38
24
20
16
1.92
28158--28314
21
7.6
21
71
4
140
36
24
17
20
1.94
28110--28317
41
5.0
41
92
1
328
37
24
18
19
1.94

Tables:   1

The End!