genome.fa.s641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000641.1 Hibiscus syriacus cultivar Beakdansim tig00001241_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64918

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7489--7519	9	3.4	9	100	0	62	32	22	22	22	1.98
7489--7528	18	2.2	18	90	0	62	32	22	22	22	1.98
10002--10115	57	2.0	57	88	5	169	22	19	11	46	1.82
10891--10935	23	2.0	23	95	0	81	40	26	20	13	1.89
11320--11377	30	1.9	30	86	6	82	48	17	1	32	1.57
11386--11437	21	2.5	21	100	0	104	48	23	0	28	1.51
11774--11816	23	2.0	23	81	9	54	18	20	23	37	1.94
15194--15244	22	2.4	22	86	3	68	21	9	29	39	1.85
15210--15255	22	2.1	22	83	0	56	23	13	26	36	1.91
24967--24998	15	2.1	16	94	5	57	56	0	6	37	1.25
25033--25151	38	3.0	38	77	16	111	73	0	9	15	1.12
25094--25146	8	6.9	8	87	8	65	75	0	11	13	1.05
25094--25146	15	3.5	15	84	2	70	75	0	11	13	1.05
25039--25145	8	14.0	7	75	15	56	75	0	7	15	1.07
25130--25181	27	2.0	25	85	11	68	63	1	5	28	1.28
26649--26693	18	2.5	19	86	10	60	73	0	0	26	0.84
26640--26690	21	2.4	22	83	12	70	70	0	1	27	0.98
26743--27123	36	10.7	36	71	18	162	43	7	3	45	1.48
26804--26918	11	9.2	13	66	18	57	44	6	0	48	1.33
26745--27026	36	8.0	36	73	17	204	44	6	2	46	1.44
26844--26917	25	3.0	26	90	4	91	43	6	1	48	1.38
26820--26948	61	2.1	61	95	0	231	41	5	2	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26859--26917	25	2.4	25	100	0	118	44	8	0	47	1.33
27466--27514	16	3.2	17	81	16	54	51	0	0	48	1.00
29409--29438	2	15.0	2	100	0	60	50	0	0	50	1.00
29659--29715	15	3.7	15	79	4	60	33	21	7	38	1.80
29865--29936	23	3.1	23	95	0	135	36	12	16	34	1.87
30105--30236	60	2.2	60	78	9	144	32	23	7	36	1.83
30367--30526	60	2.7	60	84	5	200	36	6	25	31	1.81
30626--30663	20	1.9	20	94	0	67	52	7	0	39	1.31
37650--37732	13	6.5	13	84	1	78	46	34	6	12	1.65
37659--37737	39	2.0	39	87	0	113	44	35	6	13	1.70
44004--44198	75	2.6	74	85	1	246	26	7	16	49	1.72
45907--45977	21	3.5	20	73	22	67	74	1	9	14	1.13
47375--47428	16	3.5	15	82	7	72	79	0	1	18	0.82
47380--47428	25	2.0	25	84	8	64	79	0	2	18	0.83
47455--47499	23	1.9	24	86	13	67	51	8	0	40	1.33
47473--47840	36	10.5	35	76	12	255	44	5	3	46	1.44
47517--47583	29	2.4	28	85	5	89	40	4	4	50	1.43
47485--47615	63	2.1	62	85	7	176	42	5	4	47	1.46
47547--47853	73	4.2	71	84	13	378	44	6	3	45	1.47
47547--47853	37	8.4	37	79	12	323	44	6	3	45	1.47
47813--47880	27	2.5	27	87	0	100	47	7	4	41	1.51
47907--47953	2	23.5	2	100	0	94	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48516--49380	84	10.5	84	78	6	656	25	19	24	30	1.98
48516--49380	165	5.3	165	79	6	773	25	19	24	30	1.98
48594--49272	249	2.7	249	90	1	1058	25	19	23	31	1.98
49245--49406	75	2.2	75	95	0	288	25	17	27	29	1.98
49632--49696	21	3.1	21	64	4	51	27	21	33	16	1.95
49626--49723	41	2.4	40	84	6	124	30	22	31	15	1.95
49925--49997	36	2.0	36	97	0	137	17	35	12	34	1.88
51020--51246	95	2.6	87	80	14	284	32	18	18	29	1.96
51078--51263	95	2.0	94	91	3	302	31	17	17	32	1.94
51738--51794	31	1.9	29	86	10	80	57	15	10	15	1.64
54724--54793	21	3.4	20	73	23	65	74	1	10	14	1.14
54871--54896	2	13.0	2	100	0	52	50	0	0	50	1.00
55055--55123	29	2.4	27	79	9	75	75	1	5	17	1.07
55071--55147	17	4.7	16	72	13	50	74	2	3	19	1.10
55072--55151	11	7.1	11	72	16	56	73	2	3	20	1.10
56108--56138	16	2.0	15	93	6	53	12	25	41	19	1.87
56423--56470	25	2.0	24	84	12	62	52	8	0	39	1.32
56425--56470	23	2.0	24	87	12	69	52	8	0	39	1.33
56443--56843	36	11.5	35	68	18	152	44	5	3	46	1.42
56520--56598	34	2.2	36	82	13	83	44	6	5	44	1.51
56549--56663	55	2.2	51	83	11	137	44	4	3	47	1.39
56639--56663	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56647--56845	36	5.5	36	80	9	235	45	5	3	46	1.42
56564--56694	49	2.6	49	71	21	119	45	5	3	45	1.41
56645--56841	73	2.7	73	88	4	281	45	5	3	46	1.42
56828--56856	2	15.0	2	92	7	51	51	0	0	48	1.00
59008--59225	108	2.0	108	95	0	391	29	23	15	31	1.95
59362--59441	33	2.4	34	91	4	126	58	1	0	40	1.06
60459--60519	28	2.2	28	87	0	86	49	3	9	37	1.52

Tables:   1

The End!