Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006410.1 Hibiscus syriacus cultivar Beakdansim tig00015455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 117329
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:7936 original size:24 final size:24
Alignment explanation
Indices: 7909--7960 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7899 AACGGATATA
7909 TCAAAAATCAAAAT-ATAAATCAGG
1 TCAAAAATC-AAATCATAAATCAGG
** *
7933 TCAAGTATCATATCATAAATCAGG
1 TCAAAAATCAAATCATAAATCAGG
7957 TCAA
1 TCAA
7961 GTAACAGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (24 bp):
TCAAAAATCAAATCATAAATCAGG
Found at i:8008 original size:48 final size:48
Alignment explanation
Indices: 7932--8023 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
7922 TATAAATCAG
*
7932 GTCAAGTATCATATCATAAATCAGGTCAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAAATCATAAATCAGGTCAAGTAACAGATCAGAATCCAA
* * *
7980 GTCAAGTATCAAATCA-GAATCCATGTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAAATCATAAAT-CAGGTCAAGTAACAGATCAGAAT
8024 TCAAATCGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.08
48 36 0.92
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (48 bp):
GTCAAGTATCAAATCATAAATCAGGTCAAGTAACAGATCAGAATCCAA
Found at i:8020 original size:24 final size:24
Alignment explanation
Indices: 7932--8023 Score: 114
Period size: 24 Copynumber: 3.8 Consensus size: 24
7922 TATAAATCAG
* * *
7932 GTCAAGTATCATATCATAAAT-CAG
1 GTCAAGTATCAGATCA-GAATCCAA
*
7956 GTCAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
* *
7980 GTCAAGTATCAAATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
8004 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
8024 TCAAATCGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
23 3 0.05
24 56 0.95
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:12686 original size:24 final size:24
Alignment explanation
Indices: 12659--12710 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
12649 AACGGATATA
*
12659 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
12683 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
12707 TCAA
1 TCAA
12711 GTAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:12773 original size:24 final size:24
Alignment explanation
Indices: 12682--12773 Score: 123
Period size: 24 Copynumber: 3.8 Consensus size: 24
12672 CATAAATCAG
* *
12682 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAA
*
12706 GTCAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
* *
12730 GTCAAGTTTCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
12754 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
12774 TCAAATCGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 3 0.05
24 57 0.95
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:12790 original size:48 final size:48
Alignment explanation
Indices: 12683--12791 Score: 114
Period size: 48 Copynumber: 2.3 Consensus size: 48
12673 ATAAATCAGG
* * *
12683 TCAAGTATCATATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAG
1 TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAA
** * * *
12731 TCAAGTTTCAGATCAG-AATCCATGTCAAGTATCAGATCAGAATTCAAA
1 TCAAGAATCAGATCAGAAAT-CAGGTCAAGTAACAGATCAGAATCCAAA
12779 TCGAA-AATCAGAT
1 TC-AAGAATCAGAT
12792 AAAATATTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.06
48 46 0.90
49 2 0.04
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (48 bp):
TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAA
Found at i:15301 original size:18 final size:18
Alignment explanation
Indices: 15278--15318 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
15268 CAACGATCAA
15278 CGGGTCGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
**
15296 CGGGTCGGGTCAATGGGT
1 CGGGTCGGGTCAACAGGT
15314 CGGGT
1 CGGGT
15319 AAACGAGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.20, G:0.49, T:0.20
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:15317 original size:31 final size:31
Alignment explanation
Indices: 15274--15334 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
15264 TGGTCAACGA
*
15274 TCAACGGGTCGGGTCAAC-AGGTCGGGTCGGG
1 TCAACGGGTCGGGTAAACGA-GTCGGGTCGGG
*
15305 TCAATGGGTCGGGTAAACGAGTCGGGTCGG
1 TCAACGGGTCGGGTAAACGAGTCGGGTCGG
15335 TCGGTTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.18, C:0.20, G:0.44, T:0.18
Consensus pattern (31 bp):
TCAACGGGTCGGGTAAACGAGTCGGGTCGGG
Found at i:21153 original size:15 final size:15
Alignment explanation
Indices: 21133--21171 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
21123 CTTAATGATT
21133 AAACCCAAAATCTGA
1 AAACCCAAAATCTGA
*
21148 AAACCCAAACTCTGA
1 AAACCCAAAATCTGA
21163 AAACCCAAA
1 AAACCCAAA
21172 GCCTTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.31, G:0.05, T:0.10
Consensus pattern (15 bp):
AAACCCAAAATCTGA
Found at i:22980 original size:227 final size:228
Alignment explanation
Indices: 22227--23174 Score: 1715
Period size: 227 Copynumber: 4.1 Consensus size: 228
22217 GTTATATTGT
* * *
22227 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
22291 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
* *
22356 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATT-A
22421 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
22455 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* *
22520 ATCTTTGGTTAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
22585 TAATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTA
131 TAA-TTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATT-
22650 AAAAAAAAATTGAAACATAAATTACATAACTTTAAAA
194 --AAAAAAATTGAAACATAAATTACATAACTTTAAAA
* *
22687 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATATTTCTTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
22752 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
22817 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGT-AGAAAACATGAAACACTATT-
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGA-AAAACATGAAACACTATTA
22880 AAAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAATTGAAACATAAATTACATAACTTTAAAA
22914 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* *
22979 ATATTTGGTTAATATTGTTAAATTTAAATTTTAAATAATATTTTATAAAATATCAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
23044 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAA
23109 AAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAATTGAAACATAAATTACATAACTTTAAAA
23142 AAAGTATATATCA-TTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
23175 GTATAAAAGT
Statistics
Matches: 698, Mismatches: 15, Indels: 15
0.96 0.02 0.02
Matches are distributed among these distances:
227 241 0.35
228 92 0.13
229 83 0.12
230 59 0.08
231 58 0.08
232 165 0.24
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.39
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGAAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:23246 original size:20 final size:19
Alignment explanation
Indices: 23223--23269 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
23213 CGATATACCA
23223 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
23243 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
23263 GGTAAAA
1 GGTAAAA
23270 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:23450 original size:17 final size:19
Alignment explanation
Indices: 23411--23453 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
23401 CAGGTAAAAT
23411 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
23431 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
23448 ATGATA
1 ATGATA
23454 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:25684 original size:21 final size:21
Alignment explanation
Indices: 25660--25703 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
25650 AAGACAATCA
25660 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
25681 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
25702 AG
1 AG
25704 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:25791 original size:32 final size:32
Alignment explanation
Indices: 25737--25797 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
25727 AAATAGATGG
*
25737 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
*
25769 AGTGGTGAAAGAAGTTTG-GGTGTTAAGGG
1 AGTGGTGAAAGAAG-TAGAGGTGTTAAGGG
25798 GTAATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.46, T:0.25
Consensus pattern (32 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
Found at i:27617 original size:20 final size:19
Alignment explanation
Indices: 27570--27619 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
27560 AATGTAGGGT
27570 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
27589 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
27608 TATTTTTTGTAT
1 TA-ATTTTGTAT
27620 GTGAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:28605 original size:391 final size:397
Alignment explanation
Indices: 27738--30050 Score: 4122
Period size: 391 Copynumber: 5.9 Consensus size: 397
27728 TATGGCCAAT
* *
27738 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCAATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AACCCA
*
27802 AAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAAGTTTACCGGTTTTATGAGAGAA
65 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
* **
27866 TATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTATTCCAGAATGAATGG
130 TATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
* *
27931 AAAACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAA
194 AAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA
*
27995 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAAGTTTACCGGTTTTATGAG
259 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
* *
28059 AGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTCTTATTCCAGAATGA
324 AGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGA
28124 ATGG-AAAC
389 ATGGAAAAC
28132 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-ACCCAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
28196 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
28261 ATGCCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATAAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
28326 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAA-TGTCGATCCCAAAA-CATCGAACC
196 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
28388 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
261 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
28453 -ATATGTCTAAATAATGTGTCGACACTAATTTAG-TT-TGTCGATATTTTTGTTCCAGAATGAAT
326 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
28515 GGAAAAC
391 GGAAAAC
28522 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28587 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
28652 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
* *
28717 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCAAAAACATCGAACC
196 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
28782 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCTGTTTTATGAGAG
261 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
28847 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
326 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
28912 GGAAAAC
391 GGAAAAC
28919 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28984 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29049 ATGTCT-AATAA-GTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29112 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
196 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
29177 CAAAAGTCTAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
261 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
29242 AATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
326 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
29306 GGAAAAC
391 GGAAAAC
*
29313 AGGGTGC-ACCTATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCA
1 AGGGTGCAACC-ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCA
29377 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
65 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
29442 TATGTCT-AATAATGT-TCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
130 TATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
29505 AAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAA--GTCGATCCCAAAATCATCGAAC
195 AAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAC
*
29568 CCAAAAGTCTAATGT-ATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
260 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
29632 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
325 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
29696 TGGAAAAC
390 TGGAAAAC
* * *
29704 AGGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTATCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
29767 AAGTATAATGTAATATGTAATTTTTC-ATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29831 ATGTCTAAATAATGTGTCGACAC-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG-A
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29894 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
196 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
29959 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGAG
261 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
30024 AATATGTCTAAATAATGTGTCGACACT
326 AATATGTCTAAATAATGTGTCGACACT
30051 GTTTATTTTT
Statistics
Matches: 1868, Mismatches: 32, Indels: 41
0.96 0.02 0.02
Matches are distributed among these distances:
388 84 0.04
389 136 0.07
390 107 0.06
391 467 0.25
392 83 0.04
393 131 0.07
394 422 0.23
395 263 0.14
396 7 0.00
397 168 0.09
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (397 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
GGAAAAC
Found at i:28777 original size:198 final size:198
Alignment explanation
Indices: 27738--30055 Score: 4063
Period size: 196 Copynumber: 11.8 Consensus size: 198
27728 TATGGCCAAT
* * *
27738 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCAATCCCAAAAACATCGAAAACCA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AACCCA
*
27802 AAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAAGTTTACCGGTTTTATGAGAGAA
65 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
* **
27866 TATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTATTCCAGAATGAATGG
130 TATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
27931 AAAAC
194 AAAAC
*
27936 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28000 AAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAAGTTTACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* * **
28064 ATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTCTTATTCCAGAATGAATGG-
131 ATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
28128 AAAC
195 AAAC
*
28132 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-ACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
28196 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
28261 ATGCCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATAAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
28326 AAC
196 AAC
28329 AGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAA-TGTCGATCCC-AAAACATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28391 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG-AT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
28455 ATGTCTAAATAATGTGTCGACACTAATTTAG-TT-TGTCGATATTTTTGTTCCAGAATGAATGGA
131 ATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
28518 AAAC
195 AAAC
*
28522 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28587 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
28652 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
28717 AAC
196 AAC
*
28720 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
* *
28785 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCTGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
28850 ATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAATGGA
131 ATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGA
28915 AAAC
195 AAAC
*
28919 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
28984 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29049 ATGTCT-AATAA-GTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29112 AAC
196 AAC
*
29115 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
29180 AAGTCTAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29245 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29310 AAC
196 AAC
* *
29313 AGGGTGCACCTATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
29378 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29443 ATGTCT-AATAATGT-TCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29506 AAC
196 AAC
*
29509 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAA--GTCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
29572 AAGTCTAATGT-ATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29636 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29701 AAC
196 AAC
* *
29704 AGGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTATCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
29767 AAGTATAATGTAATATGTAATTTTTC-ATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
29831 ATGTCTAAATAATGTGTCGACAC-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG-A
131 ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
29894 AAC
196 AAC
*
29897 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAA
1 AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
*
29962 AAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
30027 ATGTCTAAATAATGTGTCGACACTGTTTA
131 ATGTCTAAATAATGTGTCGACACTTTTTA
30056 TTTTTCGATA
Statistics
Matches: 2052, Mismatches: 45, Indels: 47
0.96 0.02 0.02
Matches are distributed among these distances:
193 161 0.08
194 123 0.06
195 327 0.16
196 533 0.26
197 300 0.15
198 434 0.21
199 174 0.08
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (198 bp):
AGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACCCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGAA
AAC
Found at i:31539 original size:6 final size:6
Alignment explanation
Indices: 31515--31594 Score: 79
Period size: 6 Copynumber: 13.3 Consensus size: 6
31505 AGCGGTCACA
* * * * *
31515 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GAAGAT GACGAT GATGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * *
31563 GACGAT GAAGCT GACGAT GAAGAT GATGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
31595 TGAAGATGAT
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.39, C:0.09, G:0.34, T:0.19
Consensus pattern (6 bp):
GAAGAT
Found at i:31595 original size:6 final size:6
Alignment explanation
Indices: 31530--31607 Score: 66
Period size: 6 Copynumber: 13.0 Consensus size: 6
31520 TGAAGCTGAC
* * * * * * * *
31530 GATGAA GATGAC GATGAA GATGAC GATGAT GATGAC GATGAA GCTGAC
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
* *
31578 GATGAA GATGAT GATGAT GAAGAT GATGAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT
31608 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.38, C:0.06, G:0.33, T:0.22
Consensus pattern (6 bp):
GATGAT
Found at i:31606 original size:24 final size:24
Alignment explanation
Indices: 31518--31603 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
31508 GGTCACAGAA
* *
31518 GATGAAGCTGACGATGAAGATGAC
1 GATGAAGATGACGATGATGATGAC
31542 GATGAAGATGACGATGATGATGAC
1 GATGAAGATGACGATGATGATGAC
* *
31566 GATGAAGCTGACGATGAAGATGATGAT
1 GATGAAGATGACGAT---GATGATGAC
31593 GATGAAGATGA
1 GATGAAGATGA
31604 TGATCCAAAC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
24 36 0.67
27 18 0.33
ACGTcount: A:0.38, C:0.08, G:0.34, T:0.20
Consensus pattern (24 bp):
GATGAAGATGACGATGATGATGAC
Found at i:31607 original size:12 final size:12
Alignment explanation
Indices: 31518--31594 Score: 118
Period size: 12 Copynumber: 6.4 Consensus size: 12
31508 GGTCACAGAA
*
31518 GATGAAGCTGAC
1 GATGAAGATGAC
31530 GATGAAGATGAC
1 GATGAAGATGAC
31542 GATGAAGATGAC
1 GATGAAGATGAC
*
31554 GATGATGATGAC
1 GATGAAGATGAC
*
31566 GATGAAGCTGAC
1 GATGAAGATGAC
*
31578 GATGAAGATGAT
1 GATGAAGATGAC
31590 GATGA
1 GATGA
31595 TGAAGATGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:31805 original size:13 final size:13
Alignment explanation
Indices: 31787--31811 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31777 TTGTAGATGT
31787 TGTCGACAATTTG
1 TGTCGACAATTTG
31800 TGTCGACAATTT
1 TGTCGACAATTT
31812 TGTTGTTGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
TGTCGACAATTTG
Found at i:33398 original size:23 final size:23
Alignment explanation
Indices: 33367--33439 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
33357 ATAGGTAAAA
* *
33367 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGATT
* *
33390 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGATT
*
33413 ATATAATGTAATAGGTAGTGATT
1 ATATAATGTAATAGGTAGCGATT
33436 ATAT
1 ATAT
33440 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGATT
Found at i:33823 original size:19 final size:20
Alignment explanation
Indices: 33796--33851 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 20
33786 ATAGGTAAAA
*
33796 ATATGATGTAATAG-CGCTT
1 ATATAATGTAATAGTCGCTT
*
33815 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATA-G--TCGCTT
33838 ATATAATGTAATAG
1 ATATAATGTAATAG
33852 GTAGTCTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 12 0.39
20 1 0.03
22 1 0.03
23 17 0.55
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (20 bp):
ATATAATGTAATAGTCGCTT
Found at i:34217 original size:23 final size:22
Alignment explanation
Indices: 34191--34267 Score: 93
Period size: 23 Copynumber: 3.5 Consensus size: 22
34181 AATAGGTAAA
34191 ATATGATGTAATAGGTAGCGCTT
1 ATAT-ATGTAATAGGTAGCGCTT
* *
34214 ATATAATGTAATAGGTATCGTTT
1 ATAT-ATGTAATAGGTAGCGCTT
* *
34237 ATATATGTAATAGGTAGTGGTT
1 ATATATGTAATAGGTAGCGCTT
34259 ATAT-TGTAA
1 ATATATGTAA
34268 AGTGTCTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
21 5 0.10
22 19 0.40
23 24 0.50
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (22 bp):
ATATATGTAATAGGTAGCGCTT
Found at i:34652 original size:22 final size:22
Alignment explanation
Indices: 34619--34694 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
34609 ATAGGTAAAA
34619 ATATGATGTAATAGGTAGCGCTT
1 ATAT-ATGTAATAGGTAGCGCTT
* *
34642 ATATATGTAATAGGTATCGTTT
1 ATATATGTAATAGGTAGCGCTT
* *
34664 ATATATGTAATAGGTAGTGGTT
1 ATATATGTAATAGGTAGCGCTT
34686 ATAT-TGTAA
1 ATATATGTAA
34695 AGTGTCTATC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.10
22 39 0.81
23 4 0.08
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (22 bp):
ATATATGTAATAGGTAGCGCTT
Found at i:34724 original size:427 final size:430
Alignment explanation
Indices: 33813--35468 Score: 2976
Period size: 427 Copynumber: 3.9 Consensus size: 430
33803 GTAATAGCGC
*
33813 TTATATAATGTAATAGGTA-TCGTTTATATAATGTAATAGGTAGTCTATCCTTTTTAT---A-TG
1 TTATATAATGTAATAGGTAGT-GGTTATAT--TGTAA-A-GT-GTCTATCCTTTTTATAAAAGTG
33873 TCCATACTTTTTTCACTGTGGAAAAC----A-TT-A--TTATCTTTTGAGTGAGTTTTAAGATAT
60 TCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATAT
*
33930 TAATTTAGTAATTATAGGCGTCTAATGATTTA-TTTTTACATTACGATATATATTATTATTAAAT
125 TAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAAT
* *
33994 TAAAAATTCTAAATATTATTTTATAAAATATCAAAATAATCAAATAATTTTTTGTGCAAATAAAA
190 TAAAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAAATAATTTTTTGTGCAAATGAAA
34059 TTATTAAATTAATATTGTAGGTGGAAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATT
254 TTATTAAATTAATATTGTAGGTGG-AAAACATGAAACACTATTAAAAAAAATTGAAACATAAATT
34124 ACATAACTTTAAAAGAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAATAGGT
318 ACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGT
34188 -AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
383 AAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
34235 TTATAT-ATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
1 TTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
*
34299 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTTAGTGAGTTTTAAGATATTAATTT
66 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
34364 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
131 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
34429 TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
196 TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
34494 ATTAATA-TGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
34558 TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATAT
326 TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATAT
34623 GATGTAATAGGTAGCGCTTATAT-ATGTAATAGGTATCGT
391 GATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
34662 TTATAT-ATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
1 TTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
34726 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
66 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
34791 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
131 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
34856 TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
196 TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
*
34921 ATTAATATTGTAGGTAGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
34986 TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATAT
326 TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATAT
**
35051 GATGTAATAGGTAGCGCTTATATAATGTAATAGGTATTAT
391 GATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
*
35091 TTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATA
1 TTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
35156 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
66 CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
*
35221 AGTAATTATAGGCGTCTAATTATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
131 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
* *
35286 TTCTAAATAATATTTTATAAAATATCAAAAAATCGAATAATTTTTTGTGCAAATGAAATTATTAA
196 TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
35351 ATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
*
35415 TTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAATA
326 TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
35469 TAATGTAATA
Statistics
Matches: 1200, Mismatches: 15, Indels: 31
0.96 0.01 0.02
Matches are distributed among these distances:
416 15 0.01
417 2 0.00
418 1 0.00
419 6 0.00
420 28 0.02
421 19 0.02
422 7 0.01
424 1 0.00
425 2 0.00
426 68 0.06
427 327 0.27
428 277 0.23
429 164 0.14
430 283 0.24
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (430 bp):
TTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATA
CTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTT
AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
TTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACT
TTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATAT
GATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGT
Found at i:35078 original size:23 final size:23
Alignment explanation
Indices: 35047--35119 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
35037 ATAGGTAAAA
* *
35047 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
* **
35070 ATATAATGTAATAGGTATTATTT
1 ATATAATGTAATAGGTAGTGCTT
*
35093 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
35116 ATAT
1 ATAT
35120 TGTAAAGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:36169 original size:37 final size:37
Alignment explanation
Indices: 36096--36170 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
36086 GTTGGAAAAT
*
36096 ATTTATATATTTTCTTTAAAACAATTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAACAATTAAAATCATAAA
* *
36133 ATTTATATAATTTTTTTTACAA-AATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAACAATT-AAAATCATAAA
36170 A
1 A
36171 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 18 0.55
38 15 0.45
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.45
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAACAATTAAAATCATAAA
Found at i:39001 original size:84 final size:83
Alignment explanation
Indices: 38864--39021 Score: 237
Period size: 84 Copynumber: 1.9 Consensus size: 83
38854 TATGTATCGA
*
38864 TTTTTTCATAAAATTTCAAAATACTGAACATCATAATAAAACAAATAACTTCAAAGAATATTAAT
1 TTTTTTCATAAAATTTCAAAATACTGAACATCATAAGAAAACAAATAACTTCAAAGAATATTAAT
38929 ATTAATATTATACATACAG
66 ATT-ATATTATACATACAG
* * * **
38948 TTTTTTCATAAAATTTTATAATATTGAACATCATAAGAAAACTGAT-ACATTCAAAGAATATTAA
1 TTTTTTCATAAAATTTCAAAATACTGAACATCATAAGAAAACAAATAAC-TTCAAAGAATATTAA
39012 TATTATATTA
65 TATTATATTA
39022 ACTGCATCGA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
83 8 0.12
84 59 0.88
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.37
Consensus pattern (83 bp):
TTTTTTCATAAAATTTCAAAATACTGAACATCATAAGAAAACAAATAACTTCAAAGAATATTAAT
ATTATATTATACATACAG
Found at i:42905 original size:24 final size:25
Alignment explanation
Indices: 42862--42914 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
42852 CCCTACATAA
* *
42862 AATAAAAGGATATTATTTTAAAATTT
1 AATAAAA-GATATTAATTTAAAAATT
42888 AATAAAA-ATATTAATTTAAAAATT
1 AATAAAAGATATTAATTTAAAAATT
42912 AAT
1 AAT
42915 TTTTCAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 18 0.72
26 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
AATAAAAGATATTAATTTAAAAATT
Found at i:42910 original size:25 final size:25
Alignment explanation
Indices: 42862--42911 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
42852 CCCTACATAA
*
42862 AATAAAAGGATATTATTTTAAAATTT
1 AATAAAA-GATATTATTTAAAAATTT
42888 AATAAAA-ATATTAATTTAAAAATT
1 AATAAAAGATATT-ATTTAAAAATT
42912 AATTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 10 0.45
26 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
AATAAAAGATATTATTTAAAAATTT
Found at i:51117 original size:35 final size:34
Alignment explanation
Indices: 51032--51118 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 34
51022 ATTTGGTATT
*
51032 TAAATACAACAAACTTACAATAAGAATTAAATGG
1 TAAATACAACAAAATTACAATAAGAATTAAATGG
* *
51066 TAAATGATAACCAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAA--GA-ATTAAATGG
51104 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
51119 ACTGAAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.53
36 1 0.02
37 5 0.11
38 10 0.22
ACGTcount: A:0.55, C:0.10, G:0.08, T:0.26
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGAATTAAATGG
Found at i:51708 original size:18 final size:18
Alignment explanation
Indices: 51674--51727 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
51664 AAGGCGGCGA
* *
51674 CATCATATATGGCTGCGG
1 CATCATAAATGGATGCGG
* *
51692 CATTATAAATGGTTGCGG
1 CATCATAAATGGATGCGG
51710 CATCATAAATGGATGCGG
1 CATCATAAATGGATGCGG
51728 TGGCTGCTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (18 bp):
CATCATAAATGGATGCGG
Found at i:53402 original size:17 final size:18
Alignment explanation
Indices: 53359--53399 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
53349 GAATTATATT
53359 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
53376 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
53394 ATTAAA
1 AGTAAA
53400 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:54370 original size:31 final size:31
Alignment explanation
Indices: 54327--54393 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
54317 TTTAAGTATC
*
54327 AAAACATCCATTGAATAACATAATTGAATGT
1 AAAATATCCATTGAATAACATAATTGAATGT
54358 AAAATATCCATTGAATAACATAATTGAATGT
1 AAAATATCCATTGAATAACATAATTGAATGT
54389 AAAAT
1 AAAAT
54394 TAAAATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (31 bp):
AAAATATCCATTGAATAACATAATTGAATGT
Found at i:56495 original size:15 final size:15
Alignment explanation
Indices: 56458--56498 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
56448 TCAACTTAAA
*
56458 GATGCTTCCTTGTCT
1 GATGCTTTCTTGTCT
56473 GATGCTTTCTTGTCT
1 GATGCTTTCTTGTCT
56488 GATGCTTTCTT
1 GATGCTTTCTT
56499 CAAGTAGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.22, G:0.20, T:0.51
Consensus pattern (15 bp):
GATGCTTTCTTGTCT
Found at i:56900 original size:22 final size:22
Alignment explanation
Indices: 56865--56907 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
56855 CATAATTATT
56865 TAAAAAATTAAATAA-AAATAC
1 TAAAAAATTAAATAAGAAATAC
*
56886 TAAAAATATTTAATAAGAAATA
1 TAAAAA-ATTAAATAAGAAATA
56908 ATTTTTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
TAAAAAATTAAATAAGAAATAC
Found at i:58010 original size:15 final size:15
Alignment explanation
Indices: 57990--58038 Score: 80
Period size: 15 Copynumber: 3.3 Consensus size: 15
57980 ATTATCGATG
57990 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
58005 AATTTTTGTATAAAT
1 AATTTTTATATAAAT
*
58020 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
58035 AATT
1 AATT
58039 AGAATTTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:58019 original size:42 final size:42
Alignment explanation
Indices: 57933--58020 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
57923 ATAATAAAAT
* * * *
57933 AATATATTATTGGTGAATTTTTATATAAATGTGTTTTATTTA
1 AATATATTATCGATGAATTTTTATATAAATATGTTTTATATA
*
57975 AATATATTATCGATGAATTTTTATATAAATAAT-TTTTGTATA
1 AATATATTATCGATGAATTTTTATATAAAT-ATGTTTTATATA
58017 AATA
1 AATA
58021 ATTTTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.51
Consensus pattern (42 bp):
AATATATTATCGATGAATTTTTATATAAATATGTTTTATATA
Found at i:60254 original size:21 final size:21
Alignment explanation
Indices: 60230--60269 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
60220 TAGAAGATAA
*
60230 TATCTAATCAGATATTTTAAT
1 TATCTAATCAGACATTTTAAT
*
60251 TATCTATTCAGACATTTTA
1 TATCTAATCAGACATTTTA
60270 TTAACCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.47
Consensus pattern (21 bp):
TATCTAATCAGACATTTTAAT
Found at i:60278 original size:21 final size:21
Alignment explanation
Indices: 60237--60279 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
60227 TAATATCTAA
* *
60237 TCAGATATTTTAATTATCTAT
1 TCAGACATTTTAATTACCTAT
60258 TCAGACATTTT-ATTAACCTAT
1 TCAGACATTTTAATT-ACCTAT
60279 T
1 T
60280 GACAATACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.49
Consensus pattern (21 bp):
TCAGACATTTTAATTACCTAT
Found at i:65671 original size:35 final size:36
Alignment explanation
Indices: 65625--65734 Score: 159
Period size: 35 Copynumber: 3.0 Consensus size: 36
65615 TGGCAATCAA
65625 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
65662 CTTTG-AAAATTGTTTTTAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
65697 CTTTGAAAAATGGTCTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG--TTTTCAAAGTTTGGTAAATGTTT
65735 GTTGAAATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
35 33 0.51
36 6 0.09
37 5 0.08
38 21 0.32
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.46
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:66917 original size:18 final size:16
Alignment explanation
Indices: 66894--66939 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
66884 TAATTATGAG
66894 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGT--A
* *
66912 GGAATTAGAATATGTA
1 GGAATTGGAATCTGTA
66928 GGAATTGGAATC
1 GGAATTGGAATC
66940 CAATTCCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 11 0.46
18 13 0.54
ACGTcount: A:0.37, C:0.04, G:0.30, T:0.28
Consensus pattern (16 bp):
GGAATTGGAATCTGTA
Found at i:67604 original size:37 final size:38
Alignment explanation
Indices: 67520--67607 Score: 135
Period size: 38 Copynumber: 2.3 Consensus size: 38
67510 CCTAAACCCG
* *
67520 AACCCGACCTGACTTGACCTGAATATCACACTTAAAAA
1 AACCCGACCCGACTCGACCTGAATATCACACTTAAAAA
67558 AACCCGACCCGACTCGACTCT-AATATCACACTT-AAAA
1 AACCCGACCCGACTCGAC-CTGAATATCACACTTAAAAA
67595 AACCCGACCCGAC
1 AACCCGACCCGAC
67608 CCGAAATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
37 17 0.36
38 28 0.60
39 2 0.04
ACGTcount: A:0.38, C:0.35, G:0.10, T:0.17
Consensus pattern (38 bp):
AACCCGACCCGACTCGACCTGAATATCACACTTAAAAA
Found at i:67874 original size:211 final size:210
Alignment explanation
Indices: 67601--68056 Score: 744
Period size: 211 Copynumber: 2.2 Consensus size: 210
67591 AAAAAACCCG
67601 ACCCGACCCGAAATAATAAAAAAATATTTTTATTTAAT-AAAACAGTGACTTAATCCGACCCGAC
1 ACCCGACCCGAAATAATAAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGAC
* * *
67665 CCAAATTATATATATTTTCGGGTCGGTCCGGTTTTTTTCACCTTAAACCCGAA-CCGACCCGAAT
66 CCAAATTATATATATTTTCGGGTCAGACCGGTTTTTTTCACCCTAAACCCGAACCCGACCCGAAT
* * *
67729 ATCACACTT-AAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCATCCGACCCGACTCGAATA
131 ATCACACTTAAAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCACCCGACCCGACCCAAATA
67793 TATGAATTAGAAATCT
196 TATGAATTAGAAA-CT
67809 AACCCGACCCGAAATAATAAAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCG
1 -ACCCGACCCGAAATAAT-AAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCG
**
67874 ACCTGAATTATATATATTTTCGGGTCAGACCGGTTTTTTTCACCCTAAACCCGAACCCGACCCGA
64 ACCCAAATTATATATATTTTCGGGTCAGACCGGTTTTTTTCACCCTAAACCCGAACCCGACCCGA
* *
67939 ATATCACACTTAAAAAAACCCGATCCGACCCGACCAAAATAAAGTTTCACCCGACCCGACCCAAA
129 ATATCACACTTAAAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCACCCGACCCGACCCAAA
68004 TATATGAATTAGAAACT
194 TATATGAATTAGAAACT
*
68021 ---CGACCCGAAATAATAAAAAAATATTTTTATTCAATA
1 ACCCGACCCGAAATAATAAAAAAATATTTTTATTTAATA
68057 TATGAATACG
Statistics
Matches: 232, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
207 21 0.09
208 14 0.06
209 17 0.07
210 21 0.09
211 74 0.32
212 22 0.09
213 63 0.27
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (210 bp):
ACCCGACCCGAAATAATAAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGAC
CCAAATTATATATATTTTCGGGTCAGACCGGTTTTTTTCACCCTAAACCCGAACCCGACCCGAAT
ATCACACTTAAAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCACCCGACCCGACCCAAATA
TATGAATTAGAAACT
Found at i:68990 original size:20 final size:20
Alignment explanation
Indices: 68965--69003 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
68955 ACGGGGTGAC
68965 ATACGAGCCATACAAGCCAT
1 ATACGAGCCATACAAGCCAT
*
68985 ATACGAGCCATACGAGCCA
1 ATACGAGCCATACAAGCCA
69004 ATGGAGAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.31, G:0.18, T:0.13
Consensus pattern (20 bp):
ATACGAGCCATACAAGCCAT
Found at i:68997 original size:9 final size:9
Alignment explanation
Indices: 68964--69003 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
68954 TACGGGGTGA
68964 CATACGAGC
1 CATACGAGC
*
68973 CATACAAGC
1 CATACGAGC
68982 CATATACGAGC
1 C--ATACGAGC
68993 CATACGAGC
1 CATACGAGC
69002 CA
1 CA
69004 ATGGAGAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 19 0.70
11 8 0.30
ACGTcount: A:0.38, C:0.33, G:0.17, T:0.12
Consensus pattern (9 bp):
CATACGAGC
Found at i:69060 original size:29 final size:29
Alignment explanation
Indices: 69010--69089 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
69000 GCCAATGGAG
* *
69010 AGGTCGCCATGCAG-CCTAGGCGACCTTGT
1 AGGTCGCCATGTAGTCC-CGGCGACCTTGT
69039 AGGTCGCCATGTAGTCCCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCCGGCGACCTTGT
*
69068 AGGTTGCCATGTAGTCCCGGCG
1 AGGTCGCCATGTAGTCCCGGCG
69090 CCATTCCCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 45 0.96
30 2 0.04
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.23
Consensus pattern (29 bp):
AGGTCGCCATGTAGTCCCGGCGACCTTGT
Found at i:69197 original size:27 final size:27
Alignment explanation
Indices: 69165--69220 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
69155 CCTACAGCTC
69165 CCAATGCATGCATGTGAACCATTTGAG
1 CCAATGCATGCATGTGAACCATTTGAG
69192 CCAATGCATGCATGTGAACCATTTGAG
1 CCAATGCATGCATGTGAACCATTTGAG
69219 CC
1 CC
69221 GTGAATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (27 bp):
CCAATGCATGCATGTGAACCATTTGAG
Found at i:69393 original size:27 final size:23
Alignment explanation
Indices: 69366--69411 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
69356 AAAAGAAAGA
69366 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
69389 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGGGAGAAGAGATTGCAG
69412 CCGAGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.39, T:0.09
Consensus pattern (23 bp):
AAGAAAGGGAGAAGAGATTGCAG
Found at i:69426 original size:25 final size:23
Alignment explanation
Indices: 69366--69426 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
69356 AAAAGAAAGA
**
69366 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
**
69389 AAGAAAGGGAGAAGAGATTGCAG
1 AAGAAAGAAAGAAGAGATTGCAG
*
69412 CCGAGAAAGAAAGAA
1 --AAGAAAGAAAGAA
69427 AGGGAGAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 23 0.70
25 10 0.30
ACGTcount: A:0.51, C:0.07, G:0.36, T:0.07
Consensus pattern (23 bp):
AAGAAAGAAAGAAGAGATTGCAG
Found at i:69665 original size:45 final size:45
Alignment explanation
Indices: 69562--69693 Score: 125
Period size: 45 Copynumber: 3.0 Consensus size: 45
69552 TACATAAATT
*
69562 AAAAATTATTTAATTAGTATATG-TTTG---ATAGTTA--TATAGTTA
1 AAAAATTATTTAATTAGT-T-TGTTTTGTTAATAGTTAGTTATA-TAA
*
69604 AAAAA-TAATTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
1 AAAAATTATTTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
**
69648 AAAAATTATTTAATTAGTTTGTGTTAATTAAATAGTTAAGTTATAT
1 AAAAATTATTTAATTAGTTTGT-TTTGTT-AATAGTT-AGTTATAT
69694 TTGTTTGTTG
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
39 2 0.03
40 5 0.07
41 11 0.15
42 5 0.07
43 7 0.09
44 7 0.09
45 19 0.25
46 4 0.05
47 7 0.09
48 8 0.11
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (45 bp):
AAAAATTATTTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
Found at i:69888 original size:15 final size:15
Alignment explanation
Indices: 69865--69895 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69855 GTTTGTTAGT
*
69865 TTATTAGTTATTATA
1 TTATAAGTTATTATA
69880 TTATAAGTTATTATA
1 TTATAAGTTATTATA
69895 T
1 T
69896 AAAGTTTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
TTATAAGTTATTATA
Found at i:72092 original size:23 final size:21
Alignment explanation
Indices: 72061--72128 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 21
72051 AAATCATTAC
72061 TAGTATCAATAATTAAATATT
1 TAGTATCAATAATTAAATATT
*
72082 TAGTAAATCAACTATTTTAAATCA-T
1 TAGT--ATCAA-TA-ATTAAAT-ATT
72107 TAGTATCAAATAATTAAATATT
1 TAGTATC-AATAATTAAATATT
72129 AACAATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
21 5 0.13
22 7 0.18
23 10 0.26
24 4 0.11
25 11 0.29
26 1 0.03
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.41
Consensus pattern (21 bp):
TAGTATCAATAATTAAATATT
Found at i:72303 original size:14 final size:14
Alignment explanation
Indices: 72284--72323 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
72274 TAATAATAAT
72284 TATTAAATCATTAG
1 TATTAAATCATTAG
*
72298 TATTAAATCATTAT
1 TATTAAATCATTAG
*
72312 TA-TAAATAATTA
1 TATTAAATCATTA
72324 CTAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (14 bp):
TATTAAATCATTAG
Found at i:72467 original size:26 final size:25
Alignment explanation
Indices: 72269--73123 Score: 548
Period size: 26 Copynumber: 34.7 Consensus size: 25
72259 GTATTCTATA
* *
72269 ATTATTA-ATAATAATTATTA-AATC
1 ATTATTATA-AATCATTATTATAATG
*
72293 ATTAGTATTAAATCATTATTATAA--
1 ATTATTA-TAAATCATTATTATAATG
* * * * *
72317 ATAATTACTAAATAATAACTA-AATA
1 ATTATTA-TAAATCATTATTATAATG
*
72342 ATTA-TATAAATCATTACTATAATG
1 ATTATTATAAATCATTATTATAATG
* * *
72366 ATTATTATCAATCATTACTA-AATC
1 ATTATTATAAATCATTATTATAATG
* * * * * *
72390 ATCA-AATCATTAAATATT-TAA--
1 ATTATTATAAATCATTATTATAATG
*
72411 ATTATTATTAAATCATTTTTATAATG
1 ATTATTA-TAAATCATTATTATAATG
72437 A-TATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
72462 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
* *
72488 ATTATTATCAAATCATTACTA-AATC
1 ATTATTAT-AAATCATTATTATAATG
* * *
72513 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
*
72537 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
72560 ATTATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
72586 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
* *
72612 ATTATTATCAAATCATTACTA-AATC
1 ATTATTAT-AAATCATTATTATAATG
* * *
72637 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
72661 ATTA-T-TAAATCATT-TTATAATG
1 ATTATTATAAATCATTATTATAATG
72683 ATTATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
72709 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
* * *
72735 ATTATTATCAATCATTACTA-AATC
1 ATTATTATAAATCATTATTATAATG
* * *
72759 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
*
72783 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
72806 ATTATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
72832 ATTATTATCAAATCATTAATATAATG
1 ATTATTAT-AAATCATTATTATAATG
*
72858 ATTATTATCAAATCATTACTA-AATCG
1 ATTATTAT-AAATCATTATTATAAT-G
* * *
72884 -TCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
*
72907 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
72930 ATTATTATTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
72956 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
* *
72982 ATTATTATCAAATCATTACTA-AATC
1 ATTATTAT-AAATCATTATTATAATG
* * *
73007 ATCAAATCATTAAAT-A-T-TTA-AATC
1 AT--TATTA-TAAATCATTATTATAATG
*
73031 ATTA-T-TAAATCATTTTTATAATG
1 ATTATTATAAATCATTATTATAATG
73054 ATTATTACTAAATCATTATTATAATG
1 ATTATTA-TAAATCATTATTATAATG
*
73080 ATTATTATCAAATCATTACTATAATG
1 ATTATTAT-AAATCATTATTATAATG
73106 ATTATTATCAAATCATTA
1 ATTATTAT-AAATCATTA
73124 CTAAATCATC
Statistics
Matches: 682, Mismatches: 77, Indels: 142
0.76 0.09 0.16
Matches are distributed among these distances:
19 25 0.04
20 5 0.01
21 11 0.02
22 25 0.04
23 60 0.09
24 86 0.13
25 100 0.15
26 334 0.49
27 32 0.05
28 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (25 bp):
ATTATTATAAATCATTATTATAATG
Found at i:72624 original size:124 final size:124
Alignment explanation
Indices: 72298--73181 Score: 1606
Period size: 124 Copynumber: 7.2 Consensus size: 124
72288 AAATCATTAG
* * * * * *
72298 TATTAAATCATTATTATAA--ATAATTACTAAATAATAACTA-AATAATTA-TAT-AAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
*
72358 CTATAATGATTATTATC-AATCATTACTAAATCATCAAATCATTAAATATTTAAATTAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
72416 TATTAAATCATTTTTATAATGA-TATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
72480 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
72539 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
72604 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
72663 TATTAAATCA-TTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
72727 CTATAATGATTATTATC-AATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
72785 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
* *
72850 ATATAATGATTATTATCAAATCATTACTAAATCGTCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
*
72909 TATTAAATCATTTTTATAATGATTATTATTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
72974 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
73033 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
1 TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
73098 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
66 CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
*
73157 TATTAAATCTTTTTTATAATGATTA
1 TATTAAATCATTTTTATAATGATTA
73182 ATAAATACAT
Statistics
Matches: 743, Mismatches: 14, Indels: 12
0.97 0.02 0.02
Matches are distributed among these distances:
118 18 0.02
119 15 0.02
120 8 0.01
121 3 0.00
122 77 0.10
123 203 0.27
124 419 0.56
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (124 bp):
TATTAAATCATTTTTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAATCATTA
CTATAATGATTATTATCAAATCATTACTAAATCATCAAATCATTAAATATTTAAATCAT
Found at i:76913 original size:28 final size:30
Alignment explanation
Indices: 76873--76935 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
76863 ATTTTTTATA
*
76873 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
76903 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
76931 TAATA
1 TAATA
76936 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:76942 original size:28 final size:28
Alignment explanation
Indices: 76877--76942 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
76867 TTTATATAAT
*
76877 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
76905 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
76933 ATAATTTATA
1 ATAATATATA
76943 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:76945 original size:21 final size:21
Alignment explanation
Indices: 76912--76960 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
76902 CTAATATAAT
76912 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
76933 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
76954 ATTAACT
1 A-TAACT
76961 AGATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:77614 original size:29 final size:29
Alignment explanation
Indices: 77572--77692 Score: 233
Period size: 29 Copynumber: 4.2 Consensus size: 29
77562 AAATACACAC
*
77572 AGGTCGCTCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
77601 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
77630 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
77659 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
77688 AGGTC
1 AGGTC
77693 ACTGTAGAAT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.15
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:82362 original size:18 final size:18
Alignment explanation
Indices: 82339--82389 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
82329 TCTTCTTTGT
82339 GTCTGAAGCGTGAGATTC
1 GTCTGAAGCGTGAGATTC
* *
82357 GTCTGAAACATGAGATTC
1 GTCTGAAGCGTGAGATTC
82375 GTCTGAAGCGTGAGA
1 GTCTGAAGCGTGAGA
82390 CTAATAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (18 bp):
GTCTGAAGCGTGAGATTC
Found at i:85784 original size:8 final size:8
Alignment explanation
Indices: 85773--86471 Score: 544
Period size: 8 Copynumber: 91.8 Consensus size: 8
85763 ATTATTTAAC
85773 TTTAATGA
1 TTTAATGA
85781 TTTAAT-A
1 TTTAATGA
* *
85788 -ATAATTA
1 TTTAATGA
*
85795 TTTAA--C
1 TTTAATGA
85801 TTTAATGA
1 TTTAATGA
85809 TTTAAT-A
1 TTTAATGA
* *
85816 -ATAATTA
1 TTTAATGA
85823 CTTTAATGA
1 -TTTAATGA
*
85832 TTTAA--C
1 TTTAATGA
85838 TTTAATGA
1 TTTAATGA
85846 TTTAAT-A
1 TTTAATGA
* *
85853 -ATAATTA
1 TTTAATGA
85860 CTTTAATGA
1 -TTTAATGA
*
85869 TTTAA--C
1 TTTAATGA
85875 TTTAATGA
1 TTTAATGA
85883 TTTAAT-A
1 TTTAATGA
* *
85890 -ATAATTA
1 TTTAATGA
85897 CTTTAATGA
1 -TTTAATGA
85906 TTTAATGA
1 TTTAATGA
85914 TTTAATGA
1 TTTAATGA
85922 TTTAAT-A
1 TTTAATGA
* *
85929 -ATAATTA
1 TTTAATGA
85936 CTTTAATGA
1 -TTTAATGA
85945 TTTAATGA
1 TTTAATGA
85953 TTTAATGA
1 TTTAATGA
85961 TTTAATGA
1 TTTAATGA
85969 TTTAATGA
1 TTTAATGA
85977 TTTAATGA
1 TTTAATGA
85985 TTTAAT-A
1 TTTAATGA
* *
85992 -ATAATTA
1 TTTAATGA
85999 CTTTAATGA
1 -TTTAATGA
*
86008 TTTAA--C
1 TTTAATGA
86014 TTTAATGA
1 TTTAATGA
86022 TTTAAT-A
1 TTTAATGA
* *
86029 ATAAAT-A
1 TTTAATGA
86036 CTTTAATGA
1 -TTTAATGA
86045 TTTAATGA
1 TTTAATGA
86053 TTTAAT-A
1 TTTAATGA
* *
86060 -ATAATTA
1 TTTAATGA
86067 TTTTAATGA
1 -TTTAATGA
86076 TTTAATGA
1 TTTAATGA
86084 TTTAATGA
1 TTTAATGA
86092 TTTAATGA
1 TTTAATGA
86100 TTTAAT-A
1 TTTAATGA
* *
86107 -ATAATTA
1 TTTAATGA
86114 CTTTAATGA
1 -TTTAATGA
86123 TTTAATGA
1 TTTAATGA
86131 TTTAAT-A
1 TTTAATGA
* *
86138 -ATAATTA
1 TTTAATGA
86145 CTTTAATGA
1 -TTTAATGA
86154 TTTAATGA
1 TTTAATGA
86162 TTTAATGA
1 TTTAATGA
86170 TTTAATGA
1 TTTAATGA
86178 TTTAAT-A
1 TTTAATGA
* *
86185 -ATAATTA
1 TTTAATGA
86192 CTTTAATGA
1 -TTTAATGA
86201 TTTAATGA
1 TTTAATGA
86209 TTTAATGA
1 TTTAATGA
86217 TTTAAT-A
1 TTTAATGA
* *
86224 -ATAATTA
1 TTTAATGA
86231 CTTTAATGA
1 -TTTAATGA
86240 TTTAATGA
1 TTTAATGA
86248 TTTAATGA
1 TTTAATGA
86256 TTTAATGA
1 TTTAATGA
86264 TTTAATGA
1 TTTAATGA
86272 TTTAAT-A
1 TTTAATGA
* *
86279 -ATAATTA
1 TTTAATGA
86286 CTTTAATGA
1 -TTTAATGA
*
86295 TTTAA--C
1 TTTAATGA
86301 TTTAATGA
1 TTTAATGA
86309 TTTAAT-A
1 TTTAATGA
* *
86316 -ATAATTA
1 TTTAATGA
86323 CTTTAATGA
1 -TTTAATGA
86332 TTTAATGA
1 TTTAATGA
86340 TTTAATGA
1 TTTAATGA
86348 TTTAAT-A
1 TTTAATGA
* *
86355 -ATAATTA
1 TTTAATGA
86362 TTTTAATGA
1 -TTTAATGA
86371 TTTAATGA
1 TTTAATGA
86379 TTTAATGA
1 TTTAATGA
86387 TTTAAT-A
1 TTTAATGA
* *
86394 -ATAATTA
1 TTTAATGA
86401 CTTTAATGA
1 -TTTAATGA
86410 TTTAAT--
1 TTTAATGA
*
86416 TTTAATAA
1 TTTAATGA
86424 TTTAAT-A
1 TTTAATGA
* *
86431 -ATAATTA
1 TTTAATGA
*
86438 CTTAAT--
1 TTTAATGA
86444 TTTAATGA
1 TTTAATGA
86452 TTTAAT--
1 TTTAATGA
86458 TTTAATGA
1 TTTAATGA
86466 TTTAAT
1 TTTAAT
86472 AATAATTACT
Statistics
Matches: 566, Mismatches: 61, Indels: 128
0.75 0.08 0.17
Matches are distributed among these distances:
6 106 0.19
7 38 0.07
8 351 0.62
9 71 0.13
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (8 bp):
TTTAATGA
Found at i:85929 original size:39 final size:39
Alignment explanation
Indices: 85801--86482 Score: 497
Period size: 39 Copynumber: 16.6 Consensus size: 39
85791 ATTATTTAAC
*
85801 TTTAATGATTTAATAATAATTACTTTAATGATTTAA--C
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
*
85838 TTTAATGATTTAATAATAATTACTTTAATGATTTAA--C
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
85875 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
85914 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
* *
85953 TTTAATGATTTAATGATTTAATGA-TTTAATGATTTAAT-A
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGATTTAATGA
* * * *
85992 -ATAATTACTTTAATGAT--TTAACTTTAATGATTTAATAATAAATA
1 TTTAATGA-TTTAATAATAATT-ACTTTAATGA-TT--TAAT---GA
* * * *
86036 CTTTAATGATTTAATGAT--TTAATAATAATTATTTTAATGA
1 -TTTAATGATTTAATAATAATTACT-TTAATGA-TTTAATGA
* * * *
86076 TTTAATGATTTAATGATTTAATGA-TTTAAT-A-ATAATTA
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGATTTAATGA
86114 CTTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 -TTTAATGA--T------TTAATAATAATTACTTTAATGATTTAATGA
86162 TTTAATGATTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 TTT-A--A-T----GATTTAATAATAATTACTTTAATGATTTAATGA
86209 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
* * * *
86248 TTTAATGATTTAATGATTTAATGA-TTTAAT-A-ATAATTA
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGATTTAATGA
* * * *
86286 CTTTAATGATTTAACTTTAATGATTTAATAATAATTACTTTAATGA
1 -TTTAATGATTTAA---TAAT-AATTACT-TTAATGA-TTTAATGA
*
86332 TTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAATGA
1 TTT-A--A-T----GATTTAATAATAATTACTTTAATGATTTAATGA
86379 TTTAATGATTTAATAATAATTACTTTAATGATTTAAT--
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
*
86416 TTTAATAATTTAATAATAATTACTTAATTTTAATGATTTAAT--
1 TTTAATGATTTAATAATAATTAC-----TTTAATGATTTAATGA
86458 TTTAATGATTTAATAATAATTACTT
1 TTTAATGATTTAATAATAATTACTT
86483 GACTTTAATG
Statistics
Matches: 538, Mismatches: 41, Indels: 132
0.76 0.06 0.19
Matches are distributed among these distances:
35 1 0.00
36 1 0.00
37 106 0.20
38 17 0.03
39 173 0.32
40 29 0.05
41 20 0.04
42 39 0.07
43 12 0.02
44 6 0.01
45 27 0.05
46 20 0.04
47 53 0.10
48 12 0.02
49 6 0.01
50 5 0.01
51 1 0.00
53 8 0.01
55 2 0.00
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (39 bp):
TTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
Found at i:86384 original size:31 final size:31
Alignment explanation
Indices: 85773--86345 Score: 445
Period size: 31 Copynumber: 17.5 Consensus size: 31
85763 ATTATTTAAC
*
85773 TTTAATGATTTAATAATAATTA-TTTAA--C
1 TTTAATGATTTAATAATAATTACTTTAATGA
85801 TTTAATGATTTAATAATAATTACTTTAATGATTTAA
1 TTTAATGATTTAATAATAATTACTTTAATG-----A
85837 CTTTAATGATTTAATAATAATTACTTTAATGATTTAA
1 -TTTAATGATTTAATAATAATTACTTTAATG-----A
85874 CTTTAATGATTTAATAATAATTACTTTAATGATTTAATGA
1 -TTTAATGATTTAATAATAATTAC--------TTTAATGA
85914 TTTAATGATTTAATAATAATTACTTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGA
* *
85945 TTTAATGATTTAATGATTTAATGA-TTTAATGA
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGA
85977 TTTAATGATTTAATAATAATTACTTTAATGATTTAA
1 TTTAATGATTTAATAATAATTACTTTAATG-----A
*
86013 CTTTAATGATTTAATAATAAATACTTTAATGA
1 -TTTAATGATTTAATAATAATTACTTTAATGA
*
86045 TTTAATGATTTAATAATAATTATTTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGA
* *
86076 TTTAATGATTTAATGATTTAATGA-TTTAAT-A
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGA
* * * *
86107 -ATAATTACTTTAATGATTTAATGA-TTTAAT-A
1 TTTAATGA-TTTAAT-A-ATAATTACTTTAATGA
* * * *
86138 -ATAATTACTTTAATGATTTAATGA-TTTAATGA
1 TTTAATGA-TTTAAT-A-ATAATTACTTTAATGA
86170 TTTAATGATTTAATAATAATTACTTTAATGA
1 TTTAATGATTTAATAATAATTACTTTAATGA
* * * *
86201 TTTAATGATTTAATGAT--TTAATAATAATTA
1 TTTAATGATTTAATAATAATTACT-TTAATGA
* *
86231 CTTTAATGATTTAATGATTTAATGA-TTTAATGA
1 -TTTAATGATTTAAT-A-ATAATTACTTTAATGA
86264 TTTAATGATTTAATAATAATTACTTTAATGATTTAA
1 TTTAATGATTTAATAATAATTACTTTAATG-----A
86300 CTTTAATGATTTAATAATAATTACTTTAATGA
1 -TTTAATGATTTAATAATAATTACTTTAATGA
86332 TTTAATGATTTAAT
1 TTTAATGATTTAAT
86346 GATTTAATAA
Statistics
Matches: 473, Mismatches: 27, Indels: 87
0.81 0.05 0.15
Matches are distributed among these distances:
28 22 0.05
29 9 0.02
30 25 0.05
31 188 0.40
32 53 0.11
33 21 0.04
34 1 0.00
35 2 0.00
36 2 0.00
37 119 0.25
39 23 0.05
40 1 0.00
45 7 0.01
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (31 bp):
TTTAATGATTTAATAATAATTACTTTAATGA
Found at i:86513 original size:115 final size:109
Alignment explanation
Indices: 85937--86497 Score: 494
Period size: 109 Copynumber: 5.0 Consensus size: 109
85927 TAATAATTAC
* * * *
85937 TTTAATGATTTAATGATTTAATGA-TTTAATGATTTAATGATTTAATGATTTAATAATAATTACT
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGATTTAA--CTTTAATAATTTAATAATAATTACT
*
86001 TTAATGATTTAA-CTTTAATGATTTAATAATAA--A-T-ACTTTAATGA
62 TTAATGATTTAATATTTAATGATTTAATAATAATTATTGA-TTTAATGA
* * * * * *
86045 TTTAATGATTTAATAATAATTATTTTAATGATTTAATGATTTAATGATTTAATGAT--TTAATAA
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAA--CTTTAATAATTTAATAATAATTACT-T
* *
86108 TAATTACTTTAATGATTTAATGATTTAATAATAATTA---CTTTAATGA
63 TAATGA-TTTAAT-ATTTAATGATTTAATAATAATTATTGATTTAATGA
* * * * * *
86154 TTTAATGATTTAATGATTTAATGA-TTTAATAATAATT-ACTTTAATGATTTAATGATTTAATGA
1 TTTAATGATTTAAT-A-ATAATTACTTTAATGAT--TTAACTTTAATAATTTAAT-A-ATAATTA
* * *
86217 -TTTAAT-A-ATAATTACTTTAATGATTTAATGAT--TTAATGATTTAATGA
60 CTTTAATGATTTAA-TA-TTTAATGATTTAATAATAATTATTGATTTAATGA
*
86264 TTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATGATTTAATAATAATTACTTTAA
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAATAATAATTACTTTAA
86329 TGATTTAATGATTTAATGATTTAATAATAATTATTTTAATGATTTAATGA
66 TGATTTAAT-ATTTAATGATTTAATAATAATTA---T--TGATTTAATGA
*
86379 TTTAATGATTTAATAATAATTACTTTAATGATTTAATTTTAATAATTTAATAATAATTACTTAAT
1 TTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAATAATAATTAC-----
86444 TTTAATGATTTAAT-TTTAATGATTTAATAATAATTACTTGACTTTAATGA
61 TTTAATGATTTAATATTTAATGATTTAATAATAATTA-TTGA-TTTAATGA
86494 TTTA
1 TTTA
86498 TATTTACTGA
Statistics
Matches: 384, Mismatches: 30, Indels: 71
0.79 0.06 0.15
Matches are distributed among these distances:
105 4 0.01
106 15 0.04
107 50 0.13
108 57 0.15
109 85 0.22
110 35 0.09
111 12 0.03
112 3 0.01
113 2 0.01
114 3 0.01
115 81 0.21
116 1 0.00
118 22 0.06
120 14 0.04
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (109 bp):
TTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATAATTTAATAATAATTACTTTAA
TGATTTAATATTTAATGATTTAATAATAATTATTGATTTAATGA
Found at i:89030 original size:172 final size:173
Alignment explanation
Indices: 88726--89084 Score: 560
Period size: 172 Copynumber: 2.1 Consensus size: 173
88716 CATCAAATAT
*
88726 AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTTGCAATTTAATCACTAAATT
1 AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
*
88791 TATAAATTCTTTCAAATTTAACCAATTAAGCATATTAATACTAAATTCAAGCATAGTATACCAAC
66 TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAAC
* * *
88856 TTTTTATAATTTACTCTAATTTCTTAAATTCCTCAAATTTTGC
131 TTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
* * *
88899 AAAACGATCCCTAATTACTATTTGGTTCTCAACATTTTCAAAGTTAGCAATTTAATC-CATAAAT
1 AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCAC-TAAAT
* * * *
88963 TT-TAAATTCTTTCTAATTTAACCAATTAAGCATACTAATACTAAATTCCAGCGTAGTATAGCAA
65 TTATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAA
* *
89027 CTTTTAATAATTTACTCTTATTCCTTAAATTCCTTAAATTTTAC
130 CTTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
*
89071 AAAATGGTCCCTAA
1 AAAATGATCCCTAA
89085 AACTTTACAA
Statistics
Matches: 169, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
172 109 0.64
173 60 0.36
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (173 bp):
AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCATAGTATACCAAC
TTTTAATAATTTACTCTAATTCCTTAAATTCCTCAAATTTTAC
Found at i:89561 original size:23 final size:23
Alignment explanation
Indices: 89535--89578 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
89525 AGTTGCATGC
89535 CCCCCACATGCAGACGTGCAGGA
1 CCCCCACATGCAGACGTGCAGGA
89558 CCCCCACATGCAGACGTGCAG
1 CCCCCACATGCAGACGTGCAG
89579 CCTTGCAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.25, C:0.41, G:0.25, T:0.09
Consensus pattern (23 bp):
CCCCCACATGCAGACGTGCAGGA
Found at i:89623 original size:22 final size:22
Alignment explanation
Indices: 89595--89652 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
89585 AGGACCCAGG
*
89595 ACCCGTGATTTCTCCTTGCAGA
1 ACCCGTGATTTCTCATTGCAGA
* *
89617 ACCCGTGCTCTCTCATTGCAGA
1 ACCCGTGATTTCTCATTGCAGA
89639 ACCCGTGA-TTCTCA
1 ACCCGTGATTTCTCA
89653 CGTCCAGTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.19, C:0.34, G:0.17, T:0.29
Consensus pattern (22 bp):
ACCCGTGATTTCTCATTGCAGA
Found at i:90433 original size:17 final size:15
Alignment explanation
Indices: 90405--90444 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
90395 AATTATTATG
*
90405 TATTTTTAGATATTT
1 TATTTTTAGATAATT
90420 TATTTTTATTGATAATT
1 TATTTTTA--GATAATT
90437 TATTTTTA
1 TATTTTTA
90445 ATCTCTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
17 14 0.64
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (15 bp):
TATTTTTAGATAATT
Found at i:91520 original size:21 final size:20
Alignment explanation
Indices: 91474--91521 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
91464 TATATTTAAA
**
91474 TTTTTTAGTAATTTAATTTT
1 TTTTTTAGTAATTTAATTCC
*
91494 TATTTTTAGTATTTTATATTCC
1 T-TTTTTAGTAATTTA-ATTCC
91516 TTTTTT
1 TTTTTT
91522 TCTCTATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (20 bp):
TTTTTTAGTAATTTAATTCC
Found at i:94548 original size:30 final size:30
Alignment explanation
Indices: 94503--94559 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
94493 TTTATTTTGA
* *
94503 GGACTAAATTAAAATTTTAACTAAATTAGG
1 GGACCAAAATAAAATTTTAACTAAATTAGG
* *
94533 GGACCAAAATAAAATTTTGATTAAATT
1 GGACCAAAATAAAATTTTAACTAAATT
94560 TGAATCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (30 bp):
GGACCAAAATAAAATTTTAACTAAATTAGG
Found at i:95732 original size:30 final size:27
Alignment explanation
Indices: 95692--95771 Score: 70
Period size: 30 Copynumber: 2.8 Consensus size: 27
95682 AATTTTCTTA
*
95692 ATATTATTTATCTGATATCTGATTTACTGT
1 ATATTTTTTATCTGATATCTGA-TTAC--T
* * *
95722 ATATTTTTTATATGATCTATGATTACT
1 ATATTTTTTATCTGATATCTGATTACT
* *
95749 ATATTTCTGTATCTGATTTCTGA
1 ATATTT-TTTATCTGATATCTGA
95772 GTATGAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
27 7 0.17
28 12 0.29
29 4 0.10
30 18 0.44
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.54
Consensus pattern (27 bp):
ATATTTTTTATCTGATATCTGATTACT
Found at i:99763 original size:63 final size:63
Alignment explanation
Indices: 99662--99791 Score: 206
Period size: 63 Copynumber: 2.1 Consensus size: 63
99652 TTCCATAGAC
* * * *
99662 CAAAATCTTCAAACCTTAATAACAATTAATACCCAGAAACTAAAAGAGGGAAAACCCAAAGAT
1 CAAAATCTTCAAACCTTAATAACAAATAATACCAAGAAACTAAAAAAAGGAAAACCCAAAGAT
* *
99725 CAAAATCTTCAAACTTTAATAACAAATAATACCAAGAAACTAAAAAAAGGAAACCCCAAAGAT
1 CAAAATCTTCAAACCTTAATAACAAATAATACCAAGAAACTAAAAAAAGGAAAACCCAAAGAT
99788 CAAA
1 CAAA
99792 CAGCCAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.55, C:0.20, G:0.08, T:0.17
Consensus pattern (63 bp):
CAAAATCTTCAAACCTTAATAACAAATAATACCAAGAAACTAAAAAAAGGAAAACCCAAAGAT
Found at i:102795 original size:20 final size:19
Alignment explanation
Indices: 102754--102806 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
102744 AATGCATTTT
* *
102754 ATGCATCAATGCACATACC
1 ATGCATCGATGCACAGACC
102773 ATGCATCGATGCACAAGACC
1 ATGCATCGATGCAC-AGACC
102793 ATGCATCGATGCAC
1 ATGCATCGATGCAC
102807 TCAGGCTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.19
Consensus pattern (19 bp):
ATGCATCGATGCACAGACC
Found at i:104819 original size:21 final size:20
Alignment explanation
Indices: 104789--104829 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
104779 TATGAGAAAT
104789 TGTTTAAAATAT-AAAAATGA
1 TGTTTAAAAT-TGAAAAATGA
104809 TGTTTCAAAATTGAAAAATGA
1 TGTTT-AAAATTGAAAAATGA
104830 AAATAAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.51, C:0.02, G:0.12, T:0.34
Consensus pattern (20 bp):
TGTTTAAAATTGAAAAATGA
Found at i:111465 original size:45 final size:46
Alignment explanation
Indices: 111416--111503 Score: 133
Period size: 45 Copynumber: 1.9 Consensus size: 46
111406 GAAAATCGAA
* * *
111416 TGCATTTTATGCATCGATGCA-TATACCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
*
111461 TGCATTTGATGCATCGATGCACAAGACCATGTATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
111504 CAGGCTACTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
45 20 0.53
46 18 0.47
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (46 bp):
TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
Found at i:112344 original size:21 final size:20
Alignment explanation
Indices: 112318--112378 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
112308 AGTCGAGGGT
112318 TATAGTGGTTATTCGGGACAA
1 TATAGTGGTT-TTCGGGACAA
112339 TATAGT-G-TTTCGGGACAA
1 TATAGTGGTTTTCGGGACAA
* *
112357 TACAGTGGTCCTTCGGGACAA
1 TATAGTGGT-TTTCGGGACAA
112378 T
1 T
112379 TTCATATGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 15 0.43
19 2 0.06
20 1 0.03
21 17 0.49
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (20 bp):
TATAGTGGTTTTCGGGACAA
Found at i:112352 original size:18 final size:20
Alignment explanation
Indices: 112329--112378 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
112319 ATAGTGGTTA
*
112329 TTCGGGACAATATAGT-GT-
1 TTCGGGACAATACAGTGGTC
112347 TTCGGGACAATACAGTGGTCC
1 TTCGGGACAATACAGTGGT-C
112368 TTCGGGACAAT
1 TTCGGGACAAT
112379 TTCATATGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 15 0.54
19 2 0.07
21 11 0.39
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (20 bp):
TTCGGGACAATACAGTGGTC
Found at i:113411 original size:38 final size:37
Alignment explanation
Indices: 113340--113442 Score: 98
Period size: 38 Copynumber: 2.6 Consensus size: 37
113330 CACTGAATAT
*
113340 TTGTCCCGAAGGACCACTATATCCCGAAGGACCATTGA
1 TTGTCCCGAA-GACCACTATATCCCGAAGGACCACTGA
* * * * * *
113378 TTGTTCCGAAGAACCACTATGTTCTGAATGACCACTGT
1 TTGTCCCGAAG-ACCACTATATCCCGAAGGACCACTGA
113416 TTGTCCCGAATGACCACTGATAATCCC
1 TTGTCCCGAA-GACCACT-AT-ATCCC
113443 TCGACTCTTG
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
37 1 0.02
38 44 0.88
39 3 0.06
40 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (37 bp):
TTGTCCCGAAGACCACTATATCCCGAAGGACCACTGA
Found at i:113442 original size:20 final size:20
Alignment explanation
Indices: 113403--113442 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
113393 ACTATGTTCT
* **
113403 GAATGACCACTGTTTGTCCC
1 GAATGACCACTGATAATCCC
113423 GAATGACCACTGATAATCCC
1 GAATGACCACTGATAATCCC
113443 TCGACTCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (20 bp):
GAATGACCACTGATAATCCC
Found at i:116854 original size:2 final size:2
Alignment explanation
Indices: 116841--116897 Score: 89
Period size: 2 Copynumber: 28.5 Consensus size: 2
116831 GGATCGGAAT
*
116841 TA TA TCA TA TA TA TC TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
116883 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
116898 GCACGAACAA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 1 0.02
2 48 0.94
3 2 0.04
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:116869 original size:25 final size:25
Alignment explanation
Indices: 116848--116897 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
116838 AATTATATCA
*
116848 TATATATCTATATATATATATATAT
1 TATATATATATATATATATATATAT
116873 TATATATATATATATATATATATAT
1 TATATATATATATATATATATATAT
116898 GCACGAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATATATATATATATATATATATAT
Done.