genome.fa.s6411.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006411.1 Hibiscus syriacus cultivar Beakdansim tig00015461_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76523

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10935--10970	15	2.6	15	87	12	51	58	0	2	38	1.13
11134--11191	25	2.3	26	82	11	75	46	1	5	46	1.35
15832--15881	24	2.1	24	85	7	66	60	14	2	24	1.45
20372--20465	47	2.0	47	97	0	179	24	12	30	31	1.93
22223--22263	21	2.0	20	90	9	66	34	31	9	24	1.88
25506--26343	228	3.7	228	85	1	937	19	24	26	29	1.98
25506--26343	456	1.8	455	81	1	1034	19	24	26	29	1.98
27874--28015	27	5.3	27	69	9	101	21	19	23	35	1.96
27874--28016	54	2.6	54	81	2	162	20	20	23	34	1.96
30878--31023	21	7.0	21	72	16	124	21	20	22	35	1.96
30884--31023	42	3.3	42	93	0	244	21	20	22	35	1.96
31109--31155	11	4.3	11	86	7	69	29	53	17	0	1.44
31109--31155	5	8.5	6	88	11	66	29	53	17	0	1.44
31787--31943	21	7.6	21	78	12	164	29	23	22	23	1.99
31762--31943	42	4.4	41	79	13	169	31	22	22	23	1.99
31787--31984	61	3.2	61	87	7	258	28	22	22	26	1.99
31912--31997	41	2.1	41	89	4	129	25	22	19	32	1.97
31928--32008	41	2.0	41	92	0	135	25	19	19	34	1.96
31952--32338	62	6.3	63	85	7	385	25	21	20	33	1.97
31929--32026	41	2.4	41	86	3	126	25	21	19	33	1.97
32014--32335	41	7.8	41	75	15	281	25	22	19	32	1.97
31933--32314	21	18.6	20	72	18	218	25	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32077--32337	144	1.8	144	95	0	477	25	21	19	32	1.97
31892--32339	62	7.3	62	84	7	367	25	22	20	32	1.98
31929--32339	103	4.0	103	83	7	467	25	21	19	32	1.97
32647--32727	41	1.9	43	87	5	121	45	16	7	30	1.74
35048--35122	37	2.0	37	97	0	141	40	16	18	25	1.91
35048--35101	12	4.4	12	74	21	58	38	18	18	24	1.93
42425--42716	43	6.8	44	89	3	384	30	24	28	17	1.97
42452--42716	86	3.1	86	93	0	451	30	24	28	17	1.97
42452--42716	129	2.1	128	94	0	458	30	24	28	17	1.97
48347--48403	24	2.4	25	79	8	73	22	14	14	49	1.79
48386--48456	24	3.0	24	82	0	88	18	9	16	54	1.69
54999--55052	26	2.1	26	100	0	108	46	7	22	24	1.77
55026--55062	20	1.9	19	89	10	58	45	10	24	18	1.81
55136--55171	16	2.2	16	100	0	72	50	0	19	30	1.48
57924--57964	16	2.5	17	88	4	57	21	17	17	43	1.87
58550--58640	17	5.3	17	74	7	85	30	26	16	26	1.97
58514--58638	52	2.4	52	87	1	169	28	25	18	27	1.98
58567--58621	12	4.8	12	75	6	60	29	27	16	27	1.97
58576--58646	23	3.0	24	75	6	74	32	23	16	26	1.96
59422--59453	2	16.0	2	93	0	55	50	3	0	46	1.17
60694--60777	7	12.0	7	85	0	105	45	34	0	20	1.51
60854--60883	14	2.1	14	93	0	51	43	0	6	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64810--64871	16	3.9	16	77	6	63	22	1	6	69	1.20
65038--65107	28	2.5	28	86	6	88	37	1	1	60	1.15
65069--65107	10	3.6	10	83	16	51	38	0	0	61	0.96
65043--65107	34	1.9	33	85	14	89	35	1	0	63	1.04
65394--65451	28	2.1	27	90	3	89	60	5	6	27	1.44
66377--66451	35	2.1	35	92	0	123	33	29	28	9	1.88
66529--66603	24	3.2	24	88	1	116	36	21	17	25	1.95
66533--66609	23	3.3	23	85	3	109	36	20	18	24	1.95
66512--66625	47	2.4	47	79	5	124	40	19	14	25	1.90
67760--67795	18	2.0	18	88	0	54	30	16	0	52	1.44
69086--69125	7	5.4	7	82	11	53	27	27	32	12	1.93
69087--69141	8	7.5	8	78	17	66	23	25	36	14	1.93
69087--69125	15	2.6	15	91	0	69	28	25	33	12	1.93
69115--69190	13	5.5	13	79	14	80	15	21	46	17	1.84
69123--69163	18	2.3	18	95	0	73	9	21	48	19	1.77
69115--69176	31	2.0	31	93	0	106	14	20	46	17	1.83
71363--71437	24	3.2	24	88	1	116	36	21	17	25	1.95
71367--71443	23	3.3	23	85	3	109	36	20	18	24	1.95
72585--72620	18	2.0	18	88	0	54	30	16	0	52	1.44
73902--73941	7	5.4	7	82	11	53	27	27	32	12	1.93
73903--73944	8	5.5	8	86	8	61	26	26	33	14	1.94
73903--73941	15	2.6	15	91	0	69	28	25	33	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73931--74004	13	5.5	13	77	15	69	13	21	47	17	1.82
73939--73977	17	2.3	17	95	0	69	5	23	51	20	1.67
73931--73990	30	2.0	30	87	6	86	11	21	48	18	1.80
76004--76077	34	2.1	35	90	2	114	33	28	28	9	1.88
76153--76227	24	3.2	24	88	1	116	36	21	17	25	1.95
76157--76233	23	3.3	23	85	3	109	36	20	18	24	1.95
76137--76249	47	2.4	47	79	7	124	39	19	15	25	1.90

Tables:   1

The End!