Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006412.1 Hibiscus syriacus cultivar Beakdansim tig00015462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84157

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3499--3566
30
2.3
30
84
0
82
42
19
5
32
1.75
11656--11813
39
3.8
40
79
13
115
25
33
18
22
1.97
11724--11819
47
2.1
45
90
7
149
28
33
15
22
1.95
11838--11954
43
2.8
40
71
12
103
23
32
18
24
1.97
12098--12123
10
2.6
10
100
0
52
26
0
0
73
0.84
12316--12348
16
2.1
16
100
0
66
57
24
12
6
1.57
12414--12488
10
7.7
10
69
21
61
58
20
12
9
1.60
12418--12482
16
4.1
16
91
0
112
58
21
12
7
1.59
13235--13290
14
4.3
14
76
17
66
53
23
12
10
1.69
13215--13289
24
3.1
24
86
3
98
56
20
10
13
1.66
25841--25875
3
11.7
3
93
0
61
31
0
34
34
1.58
32652--32696
3
15.0
3
100
0
90
66
0
0
33
0.92
36842--36888
22
2.1
23
88
4
69
38
25
12
23
1.90
42838--42867
15
2.0
15
100
0
60
33
13
20
33
1.91
44755--44787
16
1.9
18
88
11
52
60
6
12
21
1.53
45254--45291
20
1.9
20
94
0
67
34
18
28
18
1.95
45992--46040
23
2.1
23
88
0
71
18
26
28
26
1.98
46004--46084
23
3.5
23
77
0
63
14
23
28
33
1.94
50199--50247
19
2.5
19
83
3
53
38
10
18
32
1.84
54352--54396
21
2.1
21
87
0
63
31
28
24
15
1.96
58655--58699
21
2.1
21
87
0
63
31
28
24
15
1.96
60094--60136
22
2.0
22
100
0
86
51
13
0
34
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60096--60144
22
2.2
22
88
3
71
55
14
0
30
1.40
60084--60663
54
10.6
54
76
12
409
53
12
0
34
1.40
60116--60820
32
25.4
32
69
26
426
52
12
0
34
1.42
60228--60270
22
2.0
22
90
0
68
53
11
2
32
1.50
60282--60324
22
2.0
22
100
0
86
51
9
0
39
1.34
60284--60332
22
2.2
22
88
3
71
55
10
0
34
1.34
60250--60609
86
4.2
86
79
9
391
52
12
0
35
1.39
60327--60379
14
3.5
14
72
18
52
56
5
0
37
1.23
60482--60530
22
2.2
22
85
3
62
55
12
0
32
1.37
60536--60584
22
2.2
22
85
3
62
57
12
0
30
1.36
60586--60631
22
2.1
22
95
0
83
52
13
0
34
1.40
60592--60639
22
2.1
22
88
3
69
56
14
0
29
1.39
60645--60719
22
3.2
22
75
14
69
56
17
0
26
1.42
60674--60797
54
2.3
54
98
0
239
51
13
0
34
1.42
60723--60765
22
2.0
22
100
0
86
51
13
0
34
1.42
60802--60992
15
12.3
15
85
8
249
49
1
0
48
1.10
60802--60992
30
6.2
30
89
6
276
49
1
0
48
1.10
62679--62747
27
2.5
27
84
11
88
17
15
8
57
1.62
64512--64541
10
3.0
10
95
0
51
20
36
10
33
1.86
67662--67729
18
3.7
17
73
19
57
47
0
2
50
1.16
75611--75654
21
2.2
19
88
8
61
50
0
2
47
1.13
81346--81375
14
2.1
14
93
0
51
33
6
16
43
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82032--82072
2
20.5
2
100
0
82
48
0
0
51
1.00
82927--82951
2
12.5
2
100
0
50
0
48
0
52
1.00

Tables:   1

The End!