genome.fa.s6413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006413.1 Hibiscus syriacus cultivar Beakdansim tig00015467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57518

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2319--2354	15	2.6	15	87	12	51	38	2	0	58	1.13
11025--11072	25	1.9	25	83	8	62	47	2	39	10	1.49
11765--11807	22	2.0	22	85	0	59	58	0	2	39	1.11
15174--15287	31	3.7	31	82	5	133	52	12	3	31	1.55
15341--15410	15	4.7	15	71	3	61	44	1	15	38	1.56
15341--15411	30	2.4	30	85	2	99	43	2	15	38	1.61
15756--15807	23	2.3	23	86	0	68	46	1	0	51	1.12
19945--19978	18	1.9	18	94	5	61	38	0	2	58	1.13
19940--19980	18	2.3	19	83	12	59	34	0	2	63	1.08
26650--26807	21	7.8	20	72	7	86	38	25	17	18	1.92
26774--27003	20	11.5	20	81	5	214	37	24	18	20	1.94
27685--27731	24	2.0	24	87	8	69	25	14	21	38	1.92
27906--27930	12	2.1	12	100	0	50	72	0	28	0	0.86
30262--30390	19	7.3	19	75	17	125	8	17	28	45	1.77
30262--30353	33	2.8	33	93	3	150	7	18	28	45	1.76
30438--30906	93	5.1	93	99	0	922	46	19	12	21	1.83
32612--32701	14	5.7	14	72	23	72	43	23	24	8	1.82
32604--32718	33	3.5	33	97	0	221	46	20	23	9	1.80
32626--32723	19	5.7	19	71	22	90	43	22	23	10	1.83
32735--32791	14	3.7	14	75	20	60	8	24	22	43	1.81
32719--32799	33	2.5	33	95	0	144	8	22	22	46	1.78
32776--32851	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32775--32852	41	1.9	41	97	0	147	12	25	16	44	1.83
32931--33001	33	2.2	33	92	0	115	47	18	22	11	1.80
33181--33235	22	2.5	22	81	0	74	20	16	40	23	1.91
33382--33575	20	9.6	20	82	5	221	19	19	25	35	1.95
33384--33555	60	2.8	60	84	0	245	19	19	26	34	1.96
33381--33697	60	5.2	60	78	7	241	19	18	25	36	1.94
33523--33639	21	5.7	19	76	14	74	18	17	23	39	1.92
33562--33644	21	4.0	21	76	6	87	24	16	24	34	1.95
34123--34181	31	1.9	31	100	0	118	44	6	6	42	1.57
39882--39914	15	2.2	15	100	0	66	27	6	12	54	1.60
43239--43309	20	3.5	20	96	0	133	36	21	21	21	1.95
43864--43939	33	2.3	34	84	8	102	10	15	25	48	1.77
43876--43958	20	4.5	19	78	15	86	10	15	24	49	1.76
43923--43966	20	2.2	20	87	0	61	13	13	20	52	1.74
45849--45932	20	4.5	20	72	17	72	36	21	21	20	1.95
45849--45970	54	2.3	53	84	1	145	38	19	22	19	1.93
45960--46118	20	8.6	20	77	18	148	16	19	22	41	1.90
45985--46119	33	3.8	34	78	9	128	15	18	22	43	1.87
46625--46700	21	3.6	21	74	0	71	25	31	21	22	1.98
46627--46709	42	2.0	42	83	4	105	22	36	19	21	1.95
48054--48089	14	2.6	14	90	0	54	30	0	22	47	1.52
48202--48283	33	2.5	33	91	2	128	43	18	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48224--48289	20	3.7	19	71	22	70	42	18	22	16	1.89
48279--48357	33	2.4	34	89	2	115	13	24	21	40	1.90
48329--48422	20	4.7	20	86	2	127	19	20	24	36	1.95
50818--50871	24	2.2	24	93	0	90	40	20	18	20	1.91
50818--50885	24	2.8	24	84	0	64	38	20	17	23	1.93
51714--51811	20	4.9	20	91	2	76	22	21	20	35	1.96
51724--51848	20	6.2	20	85	3	171	20	21	20	37	1.94
51797--51900	52	2.0	52	98	0	199	22	23	19	35	1.96

Tables:   1

The End!