genome.fa.s6415.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006415.1 Hibiscus syriacus cultivar Beakdansim tig00015474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95801

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3071--3102	12	2.7	12	90	0	55	25	12	0	62	1.30
3344--3390	23	2.0	24	91	4	78	40	25	19	14	1.90
3755--3807	6	9.0	6	76	12	56	47	16	3	32	1.65
4235--4289	21	2.5	22	80	11	69	25	25	16	32	1.96
8143--8218	21	3.6	22	81	15	81	26	22	15	35	1.94
9345--9380	14	2.5	15	90	4	56	66	0	5	27	1.13
9411--9517	16	6.2	16	70	19	58	72	1	7	17	1.16
9539--9614	17	4.3	18	75	20	54	69	1	10	18	1.24
9550--9608	22	2.6	22	81	5	73	71	0	10	18	1.14
9550--9608	12	5.1	12	80	12	61	71	0	10	18	1.14
9652--9691	16	2.4	17	87	4	55	75	0	7	17	1.03
21021--21071	27	1.9	26	84	11	68	19	5	1	72	1.15
21047--21080	10	3.4	10	95	0	59	20	2	0	76	0.92
31331--31777	105	4.3	105	96	0	804	34	25	18	22	1.96
31699--31839	62	2.3	62	98	0	273	34	26	14	24	1.94
31594--31944	167	2.1	167	97	0	657	34	25	16	22	1.95
31761--31953	105	1.8	105	98	0	377	34	24	17	23	1.96
34544--34582	19	2.1	19	95	0	69	66	5	5	23	1.32
34721--35087	77	4.9	75	84	6	347	35	8	17	38	1.81
34851--34982	37	3.5	39	70	11	112	37	11	15	35	1.84
34910--35023	37	2.9	38	69	18	101	32	7	19	40	1.80
34960--35091	68	1.9	68	92	0	219	31	9	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34883--35157	145	1.9	145	80	4	322	36	8	16	38	1.80
35240--35277	20	1.9	20	94	0	67	36	5	13	44	1.66
35191--35442	135	1.9	135	84	3	346	39	10	11	38	1.76
36285--36573	77	3.7	77	75	10	273	38	14	8	38	1.77
38731--38772	2	21.0	2	100	0	84	50	0	0	50	1.00
38985--39024	21	1.9	21	85	10	55	40	2	2	55	1.27
40723--40792	3	23.0	3	77	13	72	62	0	0	37	0.95
40724--40792	25	2.8	25	80	6	79	63	0	0	36	0.94
40723--40792	28	2.5	28	81	6	90	62	0	0	37	0.95
42289--42387	22	4.5	22	87	5	146	37	13	15	34	1.86
48569--48638	35	2.0	34	91	2	113	61	10	11	17	1.56
50114--50148	17	2.0	18	94	5	63	68	0	11	20	1.20
51205--51231	2	13.5	2	100	0	54	48	0	0	51	1.00
51228--51267	21	1.9	21	85	10	55	40	2	2	55	1.27
52001--52054	3	18.0	3	75	21	51	64	0	0	35	0.94
52001--52054	10	5.3	10	77	8	56	64	0	0	35	0.94
52005--52051	13	3.8	13	80	5	53	65	0	0	34	0.93
53075--53099	13	1.9	13	100	0	50	56	8	32	4	1.47
54597--54704	31	3.5	31	77	16	118	35	22	31	11	1.89
54737--54814	29	2.7	29	92	4	122	15	30	32	21	1.94
54891--54943	27	2.0	27	100	0	106	30	22	20	26	1.98
55055--55100	23	2.0	23	95	0	83	50	4	39	6	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55105--55157	21	2.5	21	96	0	97	62	0	35	1	1.06
55103--55134	17	1.9	16	93	6	55	62	0	37	0	0.95
55358--55448	44	2.0	46	87	8	134	39	0	12	48	1.40
55489--55566	35	2.3	34	81	12	90	41	0	12	46	1.42
55612--55658	16	3.0	16	84	9	53	29	0	10	59	1.31
55633--55663	15	2.1	14	94	5	53	38	0	6	54	1.26
57817--57849	17	1.9	17	93	0	57	45	12	6	36	1.66
57824--57888	25	2.6	24	76	13	60	50	7	3	38	1.47
57950--58036	38	2.4	37	81	9	99	51	4	2	41	1.35
57966--58193	14	17.1	13	73	18	120	46	8	2	42	1.47
57966--58193	26	9.2	26	73	12	174	46	8	2	42	1.47
57982--58251	124	2.2	123	92	2	445	45	9	1	42	1.46
60319--60377	26	2.3	24	78	16	64	40	3	8	47	1.51
61187--61249	28	2.2	30	91	5	103	57	11	0	31	1.34
61191--61256	28	2.4	28	85	10	98	56	10	0	33	1.34
61226--61274	21	2.3	21	85	3	71	53	16	0	30	1.43
61749--61822	25	3.2	25	62	31	63	21	36	21	20	1.95
61759--61833	20	3.5	20	67	22	62	22	40	18	18	1.92
61752--61841	45	2.0	45	100	0	180	22	37	20	20	1.94
61770--61843	25	3.2	25	64	25	70	21	41	17	18	1.90
61759--61870	45	2.6	45	85	7	142	20	43	16	18	1.88
66530--66593	2	32.0	2	100	0	128	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75213--75269	4	13.8	4	76	10	53	80	0	1	17	0.79
75206--75284	25	3.1	25	80	8	72	79	0	3	16	0.87
75212--75286	30	2.5	30	86	6	98	80	0	2	17	0.84
75206--75286	8	9.8	8	75	15	67	79	0	3	17	0.88
75397--75427	16	1.9	16	93	0	53	48	3	6	41	1.45
75367--75502	38	3.6	38	80	8	143	44	9	5	41	1.59
75409--75526	38	3.2	37	82	9	134	45	11	5	38	1.62
75542--75588	2	24.0	2	95	4	87	51	0	0	48	1.00
75999--76032	14	2.5	13	86	13	50	88	0	11	0	0.52
88220--88267	21	2.3	21	96	0	87	20	25	25	29	1.99
88228--88274	21	2.2	20	85	10	67	23	27	19	29	1.98
91005--91110	23	4.8	22	75	14	101	27	19	24	28	1.99
91005--91110	44	2.4	44	84	7	126	27	19	24	28	1.99
91005--91105	21	4.6	22	77	12	82	27	19	25	26	1.99

Tables:   1

The End!