Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006416.1 Hibiscus syriacus cultivar Beakdansim tig00015481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91721

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2924--2991
31
2.2
31
89
0
109
26
32
10
30
1.90
18359--18411
26
2.0
26
96
0
97
15
9
13
62
1.54
19681--19734
2
27.0
2
100
0
108
50
0
0
50
1.00
20524--20660
60
2.3
60
80
9
163
31
13
18
36
1.90
21968--22009
22
1.9
22
85
0
57
57
7
11
23
1.59
25420--25496
37
2.1
37
85
4
102
48
1
3
46
1.28
30945--31240
42
6.9
43
78
7
246
48
4
18
27
1.67
30926--31239
43
7.3
43
77
10
270
49
4
18
28
1.66
30926--31240
85
3.7
85
77
8
325
48
4
18
28
1.66
32392--32432
21
2.0
21
85
9
57
36
9
7
46
1.65
35082--35132
25
2.0
25
84
0
66
29
19
7
43
1.79
47933--48033
49
2.0
50
98
1
195
41
18
7
31
1.79
47933--48010
26
3.1
26
61
17
65
37
20
10
32
1.86
58083--58194
55
2.1
54
98
1
215
44
13
14
27
1.82
58472--58516
14
3.4
14
82
11
51
44
4
0
51
1.21
64281--64373
23
4.2
21
80
13
98
46
2
1
50
1.20
64430--64486
17
3.4
17
73
20
57
52
0
1
45
1.11
64294--64494
17
12.4
16
65
20
55
48
1
1
48
1.22
64674--64721
22
2.1
23
85
11
64
52
0
0
47
1.00
68690--68745
28
2.0
29
85
3
78
41
3
8
46
1.52
69994--70048
18
2.9
19
78
10
60
21
3
5
69
1.25
70350--70399
20
2.5
20
80
0
64
18
18
4
60
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78964--79011
20
2.5
19
80
6
60
18
18
4
58
1.55
83847--83881
18
1.9
18
88
0
52
37
5
17
40
1.73
86274--86299
13
2.0
13
100
0
52
7
7
7
76
1.15
88631--88680
23
2.2
23
82
7
57
56
12
20
12
1.67
88921--88971
2
25.5
2
100
0
102
50
0
0
49
1.00

Tables:   1

The End!