genome.fa.s6418.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006418.1 Hibiscus syriacus cultivar Beakdansim tig00015483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114890

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2826--2855	2	15.5	2	93	6	53	53	0	0	46	1.00
4307--4450	32	4.6	32	74	11	95	41	10	7	40	1.68
4326--4451	32	4.0	32	74	12	118	41	10	7	40	1.68
4898--4996	41	2.4	43	80	14	118	43	2	4	50	1.32
5063--5103	21	1.9	21	85	14	57	31	2	4	60	1.30
8819--8885	34	2.1	34	86	10	97	32	1	0	65	1.02
8814--8877	23	2.7	24	76	11	62	37	1	0	60	1.06
8835--8900	34	2.0	34	83	13	86	34	1	0	63	1.04
16667--16713	20	2.3	21	82	10	53	44	0	0	55	0.99
17411--17786	186	2.0	186	95	0	680	32	16	11	40	1.84
19350--19412	23	2.7	23	92	0	99	38	20	4	36	1.74
19831--19893	23	2.7	23	92	0	99	38	20	4	36	1.74
20315--20377	23	2.7	23	92	0	99	38	20	4	36	1.74
18945--21394	966	2.5	962	96	0	4580	40	11	7	40	1.69
20796--20851	23	2.4	23	87	0	85	37	19	5	37	1.75
18945--21394	482	5.1	481	97	0	4578	40	11	7	40	1.69
21279--21341	23	2.7	23	95	0	108	38	19	4	38	1.73
21427--21469	20	2.3	18	85	14	61	20	16	11	51	1.75
21612--21672	20	3.1	19	84	13	79	18	14	11	55	1.68
22147--22209	23	2.7	23	95	0	108	38	19	4	38	1.73
22633--22691	23	2.6	23	91	0	91	40	15	5	38	1.69
21953--23230	482	2.7	482	98	0	2448	40	11	7	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23115--23168	23	2.3	23	90	0	81	40	16	5	37	1.72
23831--23873	20	2.3	18	85	14	61	20	16	11	51	1.75
24017--24063	20	2.3	20	86	10	69	17	14	10	57	1.65
24112--25061	229	4.1	229	96	0	1724	39	7	7	45	1.61
25170--25205	17	2.1	17	89	0	54	33	22	13	30	1.93
43301--43363	21	3.0	21	90	4	99	25	26	23	23	2.00
43300--43371	22	3.3	22	88	3	110	26	25	20	27	1.99
43876--43921	22	2.1	22	91	0	74	19	21	32	26	1.97
46420--46470	19	2.6	18	82	14	50	49	1	1	47	1.24
46435--46470	19	1.9	18	88	5	54	50	2	0	47	1.15
48630--48674	2	22.5	2	100	0	90	51	0	0	48	1.00
49247--49290	22	2.0	22	86	0	61	18	11	9	61	1.55
51973--52021	20	2.6	19	83	6	55	69	2	0	28	1.00
56002--56049	21	2.3	21	100	0	96	37	8	12	41	1.73
60791--60823	13	2.4	14	90	10	50	48	24	9	18	1.76
62992--63040	21	2.2	22	82	13	57	26	4	4	65	1.29
66036--66294	122	2.1	120	82	4	297	31	11	7	49	1.66
67886--67997	35	3.2	35	86	5	147	41	20	0	36	1.59
69020--69132	35	3.2	34	88	5	163	33	0	23	42	1.60
70921--70970	25	2.0	26	92	4	84	20	4	34	42	1.70
70922--70978	25	2.2	26	87	3	80	22	3	33	40	1.71
70890--71301	107	3.8	106	87	4	560	25	5	26	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71134--71190	23	2.4	24	82	5	71	22	3	35	38	1.72
71231--71310	26	3.1	26	98	0	151	20	3	30	46	1.68
71635--71694	28	2.1	28	100	0	120	26	20	25	28	1.99
79368--79418	25	2.1	24	85	7	68	47	9	0	43	1.36
80190--80228	20	2.0	20	89	0	60	69	2	0	28	1.02
86818--86878	6	10.2	6	84	7	70	45	0	36	18	1.49
86803--86879	18	4.6	18	72	18	67	45	0	38	15	1.46
88488--88623	32	4.4	31	75	8	105	41	7	10	41	1.67
88478--88604	32	4.0	31	78	10	123	40	7	9	41	1.66
88478--88604	63	2.0	64	84	1	166	40	7	9	41	1.66
90092--90116	2	12.5	2	100	0	50	48	0	0	52	1.00
100494--100526	11	2.8	12	86	9	50	45	0	3	51	1.16
103082--103132	24	2.0	26	88	7	79	39	19	13	27	1.90
108606--108632	13	2.1	13	100	0	54	29	14	11	44	1.80
111630--111663	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!