genome.fa.s6419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006419.1 Hibiscus syriacus cultivar Beakdansim tig00015486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137293

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2557--2586	13	2.2	14	94	5	53	40	13	26	20	1.89
3127--3176	20	2.5	20	96	3	93	72	8	4	16	1.24
5382--5426	22	2.0	22	86	0	63	13	15	13	57	1.65
6110--6705	36	15.9	36	75	11	448	21	19	23	35	1.96
6174--6795	115	5.5	115	84	6	782	21	20	24	34	1.97
6110--6795	223	3.0	224	82	6	878	21	19	23	34	1.96
11832--11875	21	2.1	21	86	0	61	13	15	11	59	1.62
13160--13205	18	2.5	18	85	3	56	47	15	0	36	1.45
13214--13284	29	2.4	30	73	2	72	32	7	1	59	1.33
23253--23282	2	15.0	2	100	0	60	50	0	0	50	1.00
24043--24096	23	2.3	23	87	0	72	22	12	18	46	1.83
24036--24095	23	2.4	27	70	21	65	21	15	18	45	1.86
24065--24150	34	2.5	34	82	0	100	20	13	18	46	1.83
25822--25857	19	1.9	19	88	5	56	19	30	2	47	1.64
30106--30188	35	2.4	35	100	0	166	14	6	16	62	1.50
33040--33098	3	19.7	3	92	0	100	62	0	33	3	1.12
44113--44166	21	2.6	21	100	0	108	38	33	9	18	1.83
49813--49891	40	1.9	42	92	5	135	59	6	21	12	1.55
51217--51352	60	2.3	60	98	0	213	35	13	19	32	1.90
55038--55089	15	3.5	15	89	0	77	9	15	65	9	1.47
57447--57524	26	3.0	26	80	12	88	78	6	2	12	1.05
57444--57520	13	5.9	13	77	10	68	77	5	2	14	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57444--57525	21	4.0	21	77	17	75	76	6	2	14	1.07
57494--57539	21	2.1	22	84	11	60	71	10	2	15	1.23
57978--58042	18	3.6	18	73	8	60	69	0	7	23	1.14
58096--58138	3	13.3	3	90	4	50	62	2	0	34	1.08
58075--58152	18	4.5	17	74	17	63	58	5	1	34	1.28
59175--59204	15	2.0	15	93	0	51	56	0	0	43	0.99
59644--60412	106	7.3	105	96	0	1322	22	18	25	33	1.97
59644--60412	316	2.4	317	95	0	1369	22	18	25	33	1.97
71675--71758	21	4.0	21	77	11	75	76	5	2	15	1.09
71678--71745	31	2.3	30	85	12	88	77	4	2	14	1.04
71676--71745	29	2.4	30	82	15	92	78	4	2	14	1.02
71679--71745	5	13.6	5	72	20	52	77	4	2	14	1.05
71675--71745	15	5.3	14	75	17	62	77	4	2	15	1.04
71675--71753	13	5.9	13	75	15	63	77	5	2	15	1.05
71727--71772	21	2.1	22	84	11	60	71	10	2	15	1.23
72218--72267	18	2.8	18	78	0	55	68	0	8	24	1.16
72300--72355	26	2.1	25	83	12	67	58	3	0	37	1.15
73367--73391	3	8.3	3	100	0	50	64	0	0	36	0.94
82590--82698	55	2.0	55	81	3	130	16	28	33	22	1.95
86969--87007	17	2.2	18	90	4	62	20	20	33	25	1.97
88512--88734	110	2.0	111	92	0	367	46	8	8	36	1.65
88858--88898	10	4.1	10	84	12	57	39	0	29	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89019--89145	51	2.5	49	87	3	164	18	31	34	15	1.92
89495--89885	130	3.0	130	96	0	732	24	14	20	41	1.89
91551--91601	19	2.6	20	90	3	77	43	23	17	15	1.88
91551--91888	20	16.6	20	79	6	214	38	19	23	18	1.93
91655--91886	40	5.7	40	84	4	293	36	18	25	20	1.94
91654--91886	83	2.8	83	88	1	337	36	18	24	20	1.95
91551--91888	40	8.3	40	75	10	265	38	19	23	18	1.93
91875--91918	20	2.2	20	91	0	70	54	15	18	11	1.70
91655--91888	60	3.8	60	82	5	243	36	18	25	20	1.95
91996--92068	6	12.2	6	100	0	146	34	49	16	0	1.46
92751--92825	6	12.5	6	100	0	150	0	16	50	33	1.45
92902--92941	20	2.0	20	90	0	62	12	17	17	52	1.74
92932--93165	20	11.4	20	86	4	279	20	25	18	35	1.95
92934--93165	40	5.7	40	86	4	320	20	25	18	36	1.95
92934--93166	83	2.8	83	91	1	364	20	25	18	36	1.95
93179--93252	20	3.7	20	92	5	123	9	18	18	52	1.72
93372--93414	2	21.5	2	100	0	86	51	0	0	48	1.00
94400--94431	2	16.0	2	100	0	64	50	0	0	50	1.00
94777--94813	17	2.2	17	100	0	74	32	24	0	43	1.55
95941--95974	10	3.4	10	87	0	50	17	5	14	61	1.52
97402--97753	136	2.6	131	79	6	341	26	15	21	37	1.92
109748--109778	2	15.5	2	93	0	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122776--122803	6	4.7	6	100	0	56	17	0	0	82	0.68
134516--134550	9	3.9	9	88	0	52	74	0	8	17	1.06

Tables:   1

The End!