genome.fa.s6420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006420.1 Hibiscus syriacus cultivar Beakdansim tig00015487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133378

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1882--1909	2	14.0	2	100	0	56	50	0	0	50	1.00
2006--2060	27	2.0	28	89	3	85	27	0	23	49	1.51
6260--6290	2	15.5	2	100	0	62	51	0	0	48	1.00
9075--9169	31	3.1	31	85	0	127	47	10	18	23	1.80
18098--18148	22	2.3	22	93	0	84	27	19	37	15	1.92
18165--18208	23	1.9	23	100	0	88	9	25	40	25	1.84
18166--18215	23	2.2	23	92	0	82	12	24	40	24	1.88
18384--18444	30	2.0	30	100	0	122	31	9	39	19	1.84
21224--21729	14	36.5	14	69	21	120	50	5	3	40	1.42
21250--21687	84	5.5	79	89	7	602	50	5	3	40	1.41
21292--21717	37	11.1	37	78	15	241	50	5	3	41	1.42
21261--21703	8	59.8	8	70	20	234	50	5	2	40	1.41
25088--25122	18	1.9	18	100	0	70	28	28	17	25	1.97
25727--25768	22	1.9	22	90	0	66	40	9	2	47	1.49
27220--27257	20	1.9	20	94	0	67	21	23	13	42	1.88
28114--28189	35	2.2	35	92	0	125	39	23	1	35	1.63
28585--28832	130	1.9	130	92	0	415	35	14	13	35	1.86
28599--28863	130	2.0	129	81	4	300	38	13	13	33	1.84
29160--29222	28	2.3	27	78	8	63	46	1	3	49	1.27
29304--29337	16	2.0	18	88	11	54	64	5	2	26	1.30
30146--30170	13	1.9	13	100	0	50	20	16	16	48	1.82
32252--32297	23	2.0	23	91	0	74	36	13	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33936--34020	30	2.8	31	91	5	138	36	14	15	34	1.87
33943--33995	16	3.4	16	67	27	51	43	13	13	30	1.82
40277--40439	89	1.8	89	89	2	256	24	22	12	41	1.88
47388--47420	17	1.9	17	93	0	57	36	3	27	33	1.72
48492--48548	22	2.5	22	88	2	69	36	21	10	31	1.87
48506--48549	22	2.0	22	100	0	88	36	18	13	31	1.90
52342--52366	10	2.5	10	100	0	50	44	8	40	8	1.63
52980--53061	2	41.0	2	100	0	164	50	0	0	50	1.00
58851--58877	2	13.5	2	100	0	54	51	0	0	48	1.00
64764--64797	16	2.1	17	88	5	52	58	23	2	14	1.50
76924--76995	24	3.1	24	94	4	121	20	43	22	13	1.87
76919--76959	5	7.8	5	84	10	55	19	53	21	4	1.63
76929--76966	17	2.2	17	95	0	67	21	47	21	10	1.80
76980--77020	7	6.0	7	85	5	57	17	26	26	29	1.97
76980--77019	13	3.0	13	85	3	53	17	27	27	27	1.98
82979--83219	122	2.0	122	96	0	446	25	11	15	46	1.80
90510--90581	37	1.9	37	85	0	99	48	11	12	27	1.75
90686--90729	22	2.0	22	82	8	54	50	4	2	43	1.35
93987--94067	39	2.1	39	92	0	135	25	13	30	29	1.94
95928--95971	2	22.0	2	100	0	88	50	0	0	50	1.00
117163--117194	2	16.0	2	100	0	64	50	0	0	50	1.00
118500--118524	5	5.0	5	100	0	50	40	60	0	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129881--129944	26	2.5	26	94	0	110	37	4	20	37	1.74
131661--131777	41	2.7	42	72	13	105	51	9	14	24	1.72
131661--131821	85	1.9	86	81	3	200	54	8	13	23	1.65
131661--131839	85	2.1	86	80	5	193	55	7	12	24	1.62

Tables:   1

The End!