genome.fa.s6421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006421.1 Hibiscus syriacus cultivar Beakdansim tig00015494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177031

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4334--4370	19	1.9	19	88	0	56	32	27	16	24	1.96
4396--4524	20	6.3	20	77	10	136	31	27	16	25	1.96
4438--4506	21	3.3	21	78	11	88	36	27	15	20	1.93
4415--4524	41	2.7	41	94	0	193	32	26	15	25	1.95
5302--5355	24	2.2	24	90	0	81	25	16	16	40	1.89
7664--7938	140	2.0	136	93	2	469	28	11	15	44	1.81
7914--8124	20	11.6	20	67	19	104	34	22	17	25	1.96
7943--8034	34	2.8	34	90	3	134	39	27	13	20	1.89
7977--8115	72	1.9	74	84	8	187	35	22	18	23	1.96
8114--8171	20	2.9	21	82	10	77	12	17	27	43	1.84
8275--8329	28	1.9	28	85	3	74	49	18	0	32	1.48
8293--8329	14	2.6	14	95	0	65	51	18	0	29	1.47
10290--10331	19	2.2	20	95	4	77	52	23	9	14	1.71
10299--10365	20	3.4	20	85	2	73	40	26	14	17	1.89
10358--10437	33	2.4	33	82	0	88	46	22	20	11	1.82
10407--10447	19	2.2	19	90	0	64	39	29	17	14	1.89
10460--10492	14	2.4	14	94	0	57	18	18	15	48	1.81
10514--10562	20	2.5	20	93	0	80	18	20	26	34	1.95
12458--12594	20	7.2	19	78	12	106	39	24	17	18	1.92
13162--13253	20	4.6	20	74	15	73	25	20	23	30	1.99
13640--13680	2	20.5	2	100	0	82	51	0	0	48	1.00
18485--18525	17	2.4	17	100	0	82	24	29	36	9	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25318--25344	14	1.9	14	100	0	54	51	7	22	18	1.70
25981--26021	18	2.3	18	87	4	57	29	7	2	60	1.36
29489--29640	4	38.2	4	97	1	288	25	0	24	50	1.50
29882--29984	30	3.4	30	95	0	179	25	20	23	31	1.98
31600--31630	16	1.9	16	93	0	53	64	6	0	29	1.18
36031--36075	2	22.5	2	100	0	90	48	0	0	51	1.00
36740--36791	25	2.1	25	96	0	95	28	11	11	48	1.74
37180--37230	23	2.2	23	82	0	57	45	1	1	50	1.24
37218--37298	19	4.3	19	72	20	64	48	1	2	48	1.23
37252--37339	27	3.3	25	75	12	77	50	1	1	47	1.16
37386--37455	32	2.2	32	82	10	81	51	1	2	44	1.25
37467--37515	24	2.0	25	84	4	64	48	0	4	46	1.20
43265--43296	16	1.9	17	93	6	57	37	0	0	62	0.95
43274--43306	14	2.2	15	89	10	50	39	0	3	57	1.14
43351--43386	2	18.0	2	100	0	72	50	0	0	50	1.00
46178--46216	17	2.4	17	95	4	71	43	0	5	51	1.24
49688--49736	25	2.0	25	100	0	98	22	36	8	32	1.84
59489--59546	30	1.9	30	85	0	80	18	24	27	29	1.98
60295--60325	7	4.6	7	92	8	55	64	0	0	35	0.94
60295--60325	13	2.3	14	94	5	55	64	0	0	35	0.94
60759--60803	16	2.8	16	82	0	63	77	2	8	11	1.07
60849--60882	4	8.5	4	87	12	52	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60844--60946	9	12.1	8	70	23	52	68	0	2	27	1.09
60853--60937	18	4.6	18	72	16	59	69	1	2	27	1.08
64688--64716	14	2.1	14	100	0	58	44	6	6	41	1.58
68553--68592	14	2.9	14	81	3	55	5	10	25	60	1.49
72639--72685	3	15.7	3	90	0	76	70	0	0	29	0.88
72732--72781	24	2.1	24	96	0	91	42	6	4	48	1.46
80271--80306	18	2.0	18	100	0	72	16	11	11	61	1.57
83775--83820	24	1.9	24	82	8	58	36	17	21	23	1.94
88177--88214	2	19.0	2	100	0	76	50	0	0	50	1.00
92998--93051	28	1.9	28	88	0	81	29	20	27	22	1.98
92998--93046	14	3.5	14	85	0	71	28	20	26	24	1.99
94705--94758	21	2.6	21	93	0	90	29	27	22	20	1.98
94773--94832	21	2.9	21	87	0	84	21	21	25	31	1.98
94858--94945	21	4.2	21	73	12	74	26	22	17	34	1.96
94718--94931	111	1.9	110	81	11	258	26	21	19	32	1.97
95674--95847	90	1.9	90	87	6	255	29	21	22	26	1.99
95807--95852	21	2.2	21	96	0	83	21	21	26	30	1.99
100210--100234	13	1.9	13	100	0	50	36	32	8	24	1.84
105026--105051	2	13.0	2	100	0	52	50	0	0	50	1.00
123394--123443	17	3.3	15	81	13	57	16	0	26	58	1.38
123687--123718	13	2.5	13	100	0	64	18	0	21	59	1.38
124696--124731	17	2.0	19	89	10	58	38	11	5	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129393--129543	64	2.3	65	84	6	182	28	16	19	35	1.94
130970--131008	17	2.4	17	95	4	71	35	23	5	35	1.77
133522--133653	55	2.4	54	92	2	219	31	21	6	41	1.77
135108--135264	64	2.4	63	80	10	176	35	19	18	26	1.95
135641--135743	29	3.5	29	93	1	170	46	15	20	17	1.84
135835--135868	15	2.3	15	94	0	59	14	20	32	32	1.93
142070--142226	64	2.5	64	80	10	187	35	20	18	26	1.95
142603--142712	29	3.8	29	95	2	186	46	16	20	17	1.84
142797--142830	15	2.3	15	94	0	59	14	20	32	32	1.93
143788--143864	30	2.5	31	87	4	111	32	14	14	38	1.86
162560--162611	19	2.7	19	93	0	95	28	15	26	28	1.96
162496--162675	83	2.2	83	83	4	229	31	17	23	27	1.97
162977--163031	27	2.1	26	80	16	60	38	9	16	36	1.80
163048--163082	12	2.9	12	100	0	70	34	0	25	40	1.56
163098--163171	29	2.6	29	97	2	141	43	16	21	18	1.88
163256--163288	15	2.2	15	94	0	57	15	21	33	30	1.94
169421--169643	64	3.5	61	79	4	194	31	19	20	28	1.97
169987--170059	28	2.6	28	93	2	119	42	17	20	19	1.89
170140--170172	15	2.2	15	94	0	57	15	21	33	30	1.94
173503--173746	124	2.0	120	93	4	418	35	8	16	39	1.80
175936--175968	15	2.2	15	94	0	57	21	0	6	72	1.05
175933--175997	23	2.8	23	83	4	87	24	0	4	70	1.06

Tables:   1

The End!