Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006424.1 Hibiscus syriacus cultivar Beakdansim tig00015499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98300

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1803--1844
19
2.2
19
95
0
75
83
0
4
11
0.79
1805--1844
18
2.2
17
91
8
62
82
0
5
12
0.82
1939--2015
34
2.3
33
78
14
86
75
2
6
15
1.12
3662--3707
21
2.2
21
100
0
92
69
0
17
13
1.19
18928--18971
14
3.1
14
100
0
88
13
43
0
43
1.44
28270--28360
29
3.2
28
66
10
76
40
6
20
31
1.78
30471--30523
2
26.5
2
100
0
106
49
0
0
50
1.00
35146--35187
21
2.0
21
90
0
66
33
23
19
23
1.97
35179--35271
21
4.4
21
95
0
168
20
25
23
30
1.99
35950--35989
21
1.9
21
100
0
80
30
22
27
20
1.98
35981--36033
21
2.5
21
81
0
61
28
20
22
28
1.99
41119--41171
25
2.1
25
89
0
79
15
39
13
32
1.85
44544--44604
22
2.7
23
78
16
65
57
8
3
31
1.44
47945--48050
51
2.0
53
87
8
155
35
13
17
33
1.89
49855--49894
2
20.0
2
100
0
80
50
0
0
50
1.00
50028--50072
19
2.3
20
78
17
51
68
4
0
26
1.08
54864--54921
20
2.8
20
92
2
89
18
37
25
17
1.93
56198--56245
19
2.5
20
82
3
62
52
6
12
29
1.63
57613--57691
21
3.8
21
83
3
106
18
37
27
15
1.91
57618--57676
20
2.8
20
84
5
73
22
40
25
11
1.88
61782--61841
21
2.8
21
87
7
77
23
20
28
28
1.99
62659--62713
22
2.5
22
84
0
83
34
7
18
40
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65245--65317
19
3.8
19
100
0
146
31
16
30
21
1.95
65728--65777
25
2.0
25
96
0
91
38
30
0
32
1.58
65728--65797
25
2.8
25
88
2
86
30
32
0
37
1.58
66464--66507
21
2.1
21
82
0
52
31
15
43
9
1.79
73929--74090
64
2.5
64
81
8
186
30
15
22
31
1.95
75696--75750
22
2.5
22
90
0
92
34
7
20
38
1.80
76646--77096
43
10.5
43
84
5
497
31
18
23
25
1.97
76646--77110
171
2.7
170
86
5
614
31
18
23
26
1.98
76666--77124
128
3.6
128
90
2
663
31
18
23
26
1.98
77613--77649
20
1.9
19
89
10
58
45
10
24
18
1.81
81659--81794
42
3.3
39
77
10
114
34
17
14
33
1.91
81728--81900
82
2.1
83
86
7
237
32
18
18
30
1.95
81851--81955
41
2.5
42
81
7
126
38
19
18
24
1.93
84939--85031
38
2.4
38
94
0
159
40
11
6
40
1.67

Tables:   1

The End!