genome.fa.s6425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006425.1 Hibiscus syriacus cultivar Beakdansim tig00015501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88895

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4692--4778	39	2.2	40	78	10	99	47	1	16	35	1.54
4784--4827	17	2.5	17	85	7	52	68	0	0	31	0.90
5983--6031	20	2.5	20	96	0	89	42	8	28	20	1.80
6818--6874	27	2.1	27	93	0	96	29	12	43	14	1.81
6900--6952	23	2.3	23	100	0	106	18	22	16	41	1.90
8433--8496	24	2.6	25	90	7	103	43	21	10	23	1.84
10603--10734	62	2.1	63	79	8	144	28	20	18	31	1.97
16491--16594	44	2.4	44	80	0	118	30	21	18	29	1.97
20345--20394	20	2.5	20	83	6	66	32	18	16	34	1.92
30393--30427	14	2.5	14	100	0	70	25	31	14	28	1.95
30477--30520	18	2.4	19	81	14	56	25	31	15	27	1.96
30510--30559	18	2.7	18	81	3	64	12	32	26	30	1.92
30510--30567	18	3.1	18	80	5	53	13	31	24	31	1.94
33090--33139	2	25.0	2	100	0	100	50	0	0	50	1.00
37073--37111	18	2.2	18	86	9	53	38	0	0	61	0.96
40774--40830	23	2.5	23	97	2	107	57	3	3	35	1.33
44912--45013	8	11.8	9	79	13	99	55	0	1	41	1.17
44921--45012	3	32.0	3	72	12	77	57	1	2	39	1.18
46421--46609	96	2.0	96	100	0	378	49	16	6	27	1.70
48361--49137	238	3.3	237	89	1	1153	32	16	17	33	1.92
48820--48899	42	1.9	42	86	0	115	26	18	20	35	1.95
48936--49350	213	2.0	211	89	3	647	33	13	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49299--49781	257	1.9	257	89	1	745	32	14	18	34	1.91
51030--51476	227	2.0	226	92	3	747	45	8	7	38	1.63
51552--51597	20	2.3	19	89	10	74	54	10	17	17	1.70
54051--54111	32	1.9	32	86	0	86	29	1	44	24	1.63
55881--55924	19	2.4	19	92	3	72	31	2	9	56	1.43
56007--57620	198	8.1	199	96	1	2926	37	14	15	32	1.88
59076--59143	21	3.4	18	69	21	55	36	8	35	19	1.83
59076--59173	6	16.3	6	80	0	70	36	7	34	21	1.81
59091--59177	3	29.0	3	77	0	84	35	5	34	24	1.79
59079--59169	42	2.2	42	91	0	146	35	7	35	21	1.83
59076--59173	18	5.4	18	78	0	88	36	7	34	21	1.81
60643--61495	184	4.7	184	97	0	1586	35	14	15	34	1.89
64051--64114	23	2.8	23	87	0	92	35	6	20	37	1.78
64051--64123	23	3.2	23	82	7	85	34	5	20	39	1.76
64269--64335	30	2.2	30	82	10	75	52	4	0	43	1.21
64481--64543	23	2.7	23	90	0	90	36	6	19	38	1.77
64481--64553	23	3.2	23	86	3	85	35	5	19	39	1.75
64990--65032	22	1.9	23	85	4	61	41	11	9	37	1.74
67607--67644	19	2.0	20	85	15	53	5	34	0	60	1.19
68619--68682	21	3.0	21	88	4	101	23	26	23	26	2.00
69178--69214	11	3.4	11	92	0	65	29	18	27	24	1.98
69206--69251	22	2.1	22	95	0	83	19	23	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69635--69683	25	2.0	23	81	14	55	30	2	20	46	1.62
75009--75046	20	1.9	20	88	0	58	23	34	26	15	1.95
75513--75576	21	3.0	21	84	4	92	23	23	23	29	1.99
76090--76134	22	2.0	22	95	0	81	20	22	33	24	1.97
77272--77319	16	2.9	16	93	3	78	14	14	0	70	1.16
78725--79113	185	2.1	184	92	1	638	42	3	8	45	1.52
80804--80846	19	2.2	20	91	4	70	37	4	25	32	1.77
80885--80917	2	17.0	2	87	6	50	48	0	3	48	1.17
80900--81352	36	12.6	35	73	15	252	45	3	5	46	1.42
80900--81167	72	3.6	71	83	9	281	43	2	5	47	1.43
81361--81446	11	7.4	11	76	15	75	18	3	1	76	0.99
81364--81433	4	16.8	4	76	18	63	20	4	1	74	1.07
81369--81445	29	2.6	29	82	13	95	19	3	0	76	0.94
81369--81442	20	3.5	21	78	16	64	20	4	0	75	0.96
81361--81444	30	2.6	31	78	19	84	19	3	1	76	1.00
82811--82835	12	2.1	12	100	0	50	40	0	0	60	0.97
83780--83812	17	1.9	17	93	0	57	6	12	9	72	1.26
84430--84474	19	2.4	19	92	3	74	11	13	6	68	1.37
87876--88531	165	4.0	164	87	2	785	30	25	20	23	1.99
88074--88604	250	2.1	246	90	2	841	30	25	20	22	1.99

Tables:   1

The End!