Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006426.1 Hibiscus syriacus cultivar Beakdansim tig00015504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101946

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4495--4598
45
2.3
46
86
6
142
11
4
55
27
1.55
4619--4861
39
6.3
39
72
14
135
20
5
47
26
1.72
4624--4744
36
3.3
36
77
8
118
22
5
46
25
1.74
4702--4789
45
2.0
44
82
10
108
20
4
47
27
1.69
4827--5001
45
3.9
45
80
0
197
16
8
45
29
1.77
4754--4970
45
5.4
39
71
15
131
17
7
46
28
1.75
4827--5001
90
1.9
90
87
0
251
16
8
45
29
1.77
4832--5029
90
2.2
90
83
0
234
19
8
42
29
1.81
9286--9365
30
2.6
30
76
5
72
26
5
0
68
1.09
10972--10996
6
4.2
6
100
0
50
0
16
36
48
1.46
17432--17478
22
2.1
23
84
11
62
61
6
14
17
1.53
17425--17527
30
3.4
30
77
10
102
59
8
15
16
1.60
35565--36152
201
2.9
201
81
3
644
35
21
17
26
1.95
38489--38531
14
2.9
15
81
18
54
25
2
9
62
1.37
38552--38713
1
162.0
1
76
0
153
6
5
0
88
0.64
38595--38712
7
17.7
7
95
4
169
1
7
0
90
0.51
38552--38713
14
11.9
13
89
9
170
6
5
0
88
0.64
46534--46571
20
1.9
20
89
10
60
52
13
13
21
1.73
46779--46827
22
2.2
22
100
0
98
36
30
8
24
1.85
48577--48610
17
2.0
17
88
11
52
29
23
5
41
1.78
54260--54568
156
2.0
153
98
1
591
47
16
15
19
1.82
56059--56114
3
18.0
3
89
7
85
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60318--60417
36
2.8
36
83
4
105
20
15
6
59
1.57
67154--67208
22
2.5
22
93
0
101
34
10
14
40
1.81
67758--68683
184
5.0
184
96
1
1640
31
15
14
38
1.88
67758--68683
369
2.5
369
95
1
1649
31
15
14
38
1.88
68624--69581
77
12.6
77
93
2
1591
22
20
21
35
1.96
68624--69581
153
6.3
153
93
2
1585
22
20
21
35
1.96
69515--69617
45
2.3
45
94
0
179
21
23
23
32
1.98
69439--69705
121
2.2
121
91
2
426
23
21
21
33
1.97
69286--69891
274
2.2
274
95
0
1095
22
21
21
34
1.96
69560--69855
153
2.0
150
91
2
475
22
20
21
35
1.96
69560--69855
76
3.9
76
91
1
479
22
20
21
35
1.96
69789--69891
45
2.3
45
94
0
179
22
23
21
33
1.98
70025--70071
3
15.0
3
86
8
67
36
0
0
63
0.94
71425--71456
14
2.1
16
88
11
50
28
0
3
68
1.04
80506--80530
13
1.9
13
100
0
50
16
0
16
68
1.22
81728--81761
5
6.8
5
86
0
50
14
0
5
79
0.91
83403--83442
17
2.4
17
100
0
80
40
5
15
40
1.68
83552--83613
2
31.0
2
100
0
124
50
50
0
0
1.00
83616--83641
12
2.2
12
100
0
52
38
26
0
34
1.57
83795--83827
10
3.3
10
95
0
57
36
0
12
51
1.39
84780--84815
19
2.0
19
89
10
58
38
16
0
44
1.48
89617--89649
15
2.2
15
100
0
66
27
24
30
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89964--90013
10
4.6
11
79
16
52
28
8
0
64
1.22
89996--90028
15
2.1
16
88
5
50
21
3
0
75
0.93
96889--96936
24
2.0
24
100
0
96
41
16
16
25
1.89

Tables:   1

The End!