genome.fa.s6427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006427.1 Hibiscus syriacus cultivar Beakdansim tig00015516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94931

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886--3943	21	2.8	21	100	0	116	24	18	15	41	1.89
9865--9912	21	2.3	21	92	0	78	20	39	20	18	1.92
15757--15820	21	3.1	21	69	10	60	23	28	31	17	1.97
19903--19948	9	5.2	9	77	15	51	4	8	0	86	0.68
19903--19948	17	2.6	17	90	10	67	4	8	0	86	0.68
26187--26225	19	2.1	18	90	4	60	12	7	2	76	1.09
29461--29510	12	4.1	12	74	23	50	66	10	10	14	1.46
33015--33477	226	2.0	232	90	6	742	37	10	17	34	1.85
36326--36406	16	4.8	16	77	18	76	46	4	6	41	1.50
36431--36525	14	6.6	15	71	19	60	52	3	6	37	1.43
36431--36529	27	3.8	27	72	19	84	51	3	7	38	1.45
36485--36524	2	21.0	2	80	19	50	52	0	2	45	1.14
36341--36525	43	4.3	42	72	16	125	50	3	7	37	1.49
36326--36529	18	12.7	15	66	21	69	50	3	7	38	1.50
36435--36557	51	2.4	51	80	11	130	50	4	7	38	1.49
36643--36672	15	2.0	15	100	0	60	33	6	20	40	1.78
43072--43124	16	3.3	16	72	0	52	41	16	11	30	1.84
47355--47696	76	4.5	75	84	10	428	44	2	5	47	1.41
47364--47709	39	8.9	39	84	7	415	44	2	6	46	1.43
48903--49014	6	18.5	6	69	12	50	23	2	1	72	1.07
48920--49010	18	5.4	17	72	22	59	26	3	0	70	1.03
48942--49018	22	3.6	20	78	16	75	25	1	0	72	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48935--49014	36	2.2	37	84	8	101	26	1	0	72	0.92
48944--49014	17	3.9	18	77	15	67	25	1	0	73	0.92
49100--49166	19	3.5	19	74	18	59	19	2	1	76	1.00
49100--49136	5	7.6	5	82	17	51	18	0	0	81	0.70
49097--49169	14	5.1	14	75	8	67	17	2	1	78	0.95
52987--53697	85	8.4	85	85	3	959	34	22	19	24	1.96
52987--53697	339	2.1	341	89	1	1070	34	22	19	24	1.96
54419--54461	21	2.0	21	81	0	50	27	27	25	18	1.98
54489--54526	20	1.9	20	88	0	58	23	34	31	10	1.89
55652--55735	30	2.8	30	96	0	150	25	17	22	34	1.96
59045--59087	21	2.0	21	81	0	50	27	27	25	18	1.98
60190--60295	31	3.5	31	72	10	83	26	18	20	33	1.96
60268--60370	30	3.4	30	95	0	179	24	20	23	32	1.98
60987--61150	86	1.9	86	79	2	186	32	21	18	26	1.97
61755--61789	12	2.9	12	95	0	61	37	0	14	48	1.44
61864--62168	39	7.8	37	86	8	380	42	3	4	49	1.42
63429--63479	6	8.2	6	75	16	50	25	0	0	74	0.82
66774--66804	14	2.1	15	94	5	55	51	29	0	19	1.47
67417--67454	3	12.7	3	100	0	76	31	0	0	68	0.90
72133--72168	2	18.0	2	94	0	63	47	0	0	52	1.00
73172--73216	22	2.0	22	100	0	90	28	35	13	22	1.92
77342--77653	166	1.9	167	80	4	371	33	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81977--82110	43	3.1	42	78	6	108	27	21	19	31	1.97
82133--82169	14	2.7	14	84	15	51	10	24	32	32	1.90
87797--87842	20	2.3	20	85	7	58	41	23	23	10	1.86
88435--88489	24	2.3	24	100	0	110	20	10	12	56	1.66
90551--90833	141	2.0	143	91	1	462	43	10	19	26	1.83
91423--91468	19	2.4	19	100	0	92	26	41	13	19	1.88

Tables:   1

The End!