genome.fa.s6429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006429.1 Hibiscus syriacus cultivar Beakdansim tig00015519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85186

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8781--8830	14	4.2	13	73	26	56	20	14	0	66	1.26
8775--8820	21	2.2	21	96	0	83	13	19	0	67	1.23
8780--8826	21	2.2	22	88	3	69	17	14	0	68	1.22
9978--10346	20	18.5	20	84	5	451	34	26	18	20	1.96
11027--11073	24	2.0	24	87	8	69	25	14	21	38	1.92
11248--11272	12	2.1	12	100	0	50	72	0	28	0	0.86
13546--13837	19	16.4	19	82	14	374	46	18	20	14	1.83
13574--13859	52	5.4	55	91	6	345	46	17	21	15	1.84
13866--13967	19	5.6	19	85	12	151	14	23	17	44	1.86
14074--14110	14	2.6	14	91	0	65	45	21	0	32	1.52
16065--16121	14	3.7	14	77	20	60	45	22	21	10	1.82
16046--16138	33	2.8	33	95	0	168	47	21	20	10	1.80
16009--16143	19	7.6	19	76	16	128	45	23	19	11	1.82
16139--16267	19	7.3	19	75	17	125	8	17	28	45	1.77
16139--16230	33	2.8	33	93	3	150	7	18	28	45	1.76
16311--16781	92	5.1	93	97	1	903	46	18	12	22	1.83
16311--16781	185	2.6	185	98	0	917	46	18	12	22	1.83
18483--18558	14	4.7	14	74	22	53	42	23	25	9	1.83
18497--18580	19	4.7	19	78	14	97	42	22	23	10	1.85
18475--18580	52	2.0	52	94	0	185	44	20	24	10	1.83
18592--18646	14	3.6	14	73	21	56	9	25	23	41	1.83
18576--18646	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18587--18668	33	2.5	33	89	2	119	9	25	21	42	1.84
18599--18687	20	4.8	20	72	19	75	12	24	19	43	1.85
18767--18837	33	2.2	33	92	0	115	47	18	22	11	1.80
19019--19073	22	2.5	22	81	0	74	20	16	40	23	1.91
19219--19411	20	9.6	20	82	5	219	19	19	25	35	1.95
19219--19411	60	3.2	60	83	0	251	19	19	25	35	1.95
19467--19518	20	2.6	20	96	0	95	21	13	26	38	1.90
19701--19754	24	2.2	26	86	6	76	42	0	5	51	1.25
20342--20420	32	2.4	33	79	12	90	17	6	2	73	1.16
20515--20556	19	2.2	19	91	0	66	14	7	0	78	0.95
23037--23097	23	2.7	22	78	17	54	60	1	4	32	1.28
30313--30506	96	2.0	96	90	2	309	42	17	11	28	1.85
36224--36291	22	3.0	22	97	2	127	26	27	26	19	1.99
36946--37104	67	2.4	67	85	4	196	18	28	25	27	1.98
43136--43203	22	3.0	22	97	2	127	26	27	26	19	1.99
43841--44012	67	2.6	67	84	4	204	18	27	26	27	1.98
52683--52759	24	3.2	24	100	0	154	20	14	27	37	1.91
52773--52827	28	2.0	28	92	7	94	43	18	21	16	1.88
57104--57180	21	3.5	21	78	14	77	35	20	16	27	1.95
58785--58814	12	2.4	13	94	5	53	20	0	16	63	1.31
59071--59107	16	2.2	17	95	4	67	37	0	45	16	1.47
61195--61252	19	3.2	19	72	18	68	5	13	27	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61223--61259	18	2.0	19	89	5	58	5	16	32	45	1.70
61384--61408	5	5.0	5	100	0	50	40	40	20	0	1.52
66038--66146	24	4.5	24	77	6	105	49	16	15	18	1.80
66050--66109	12	5.0	12	74	8	59	50	18	15	16	1.79
68577--68617	15	2.6	16	88	7	57	29	24	26	19	1.98
70699--70753	24	2.3	24	83	0	74	50	18	10	20	1.76
75588--75629	21	2.1	21	91	8	70	61	14	0	23	1.32
75907--75949	22	1.9	23	85	4	61	51	0	2	46	1.13
76865--76932	24	2.9	23	80	8	75	69	5	0	25	1.11
76898--76928	16	1.9	16	93	0	53	67	6	0	25	1.14
77969--77995	2	13.5	2	100	0	54	48	0	0	51	1.00
78685--78714	14	2.1	15	93	6	53	36	26	0	36	1.57
79182--79433	126	2.0	126	98	0	486	39	16	8	35	1.79
82964--82999	12	3.0	12	100	0	72	41	25	0	33	1.55
83359--83520	64	2.5	64	87	4	211	26	22	19	31	1.98

Tables:   1

The End!