Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000643.1 Hibiscus syriacus cultivar Beakdansim tig00001244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57618

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
615--1288
105
6.6
104
89
6
950
22
22
19
36
1.95
615--1288
302
2.2
306
88
5
972
22
22
19
36
1.95
2189--2302
7
15.7
7
74
17
58
9
12
0
78
0.98
2202--2291
8
12.0
8
80
18
81
11
11
0
77
0.99
2189--2306
37
3.2
37
77
17
120
10
12
0
77
1.00
5797--5823
14
1.9
14
100
0
54
66
3
22
7
1.33
15430--15463
15
2.2
16
89
5
52
29
0
32
38
1.58
18389--18429
17
2.4
17
84
11
57
65
0
0
34
0.93
18396--18437
22
1.9
23
85
9
61
64
0
0
35
0.94
19253--19421
60
2.8
60
82
9
177
40
2
21
34
1.67
27214--27300
31
2.8
32
87
5
124
59
5
3
31
1.37
30305--30544
119
2.0
119
96
0
444
30
23
21
24
1.99
36376--36454
38
2.1
38
85
4
106
39
2
18
39
1.65
36814--36868
21
2.6
21
91
0
83
23
16
27
32
1.96
40201--40252
21
2.5
21
93
0
86
13
21
28
36
1.91
40214--40259
21
2.2
21
84
0
56
26
21
19
32
1.97
41223--41355
45
3.0
45
96
0
239
26
18
26
28
1.98
41244--41328
26
3.5
26
69
21
94
25
21
25
27
1.99
42065--42093
14
2.0
15
93
6
51
62
27
3
6
1.37
43611--43686
23
3.5
22
80
5
91
26
21
22
30
1.99
49521--49608
45
2.0
45
93
0
149
28
18
26
27
1.98
52687--52812
44
2.9
44
92
0
198
30
11
20
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57408--57508
36
2.8
36
87
1
141
16
25
22
34
1.95
57422--57521
36
2.8
36
89
0
146
18
24
23
35
1.96

Tables:   1

The End!