Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006430.1 Hibiscus syriacus cultivar Beakdansim tig00015524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96563

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--533
131
2.6
130
87
1
468
31
10
17
39
1.85
196--544
130
2.7
130
85
3
450
32
10
17
38
1.84
2075--2108
17
2.0
17
88
11
52
58
0
0
41
0.98
4851--4892
21
2.0
22
86
9
61
59
2
2
35
1.23
5092--5116
4
6.2
4
100
0
50
76
0
0
24
0.80
8175--8215
18
2.2
18
86
8
55
14
12
7
65
1.45
8554--8582
12
2.3
13
94
5
51
20
0
13
65
1.26
9197--9312
60
1.9
60
81
6
137
36
15
4
43
1.66
17064--17130
33
2.1
33
94
2
118
8
23
19
47
1.77
17314--17363
23
2.2
23
85
0
64
42
6
20
32
1.76
17320--17364
23
2.0
23
90
0
72
37
4
22
35
1.74
17321--17370
23
2.2
23
85
0
64
44
4
20
32
1.70
17429--18087
198
3.3
197
84
6
845
31
16
14
38
1.88
23046--23079
17
2.0
17
88
11
52
61
14
0
23
1.33
23500--23606
44
2.4
44
88
0
151
30
18
19
30
1.96
37153--37196
21
2.2
20
87
4
61
59
2
4
34
1.30
38435--38486
22
2.5
22
78
9
65
30
15
28
25
1.96
39477--39565
32
2.9
30
83
8
99
25
16
22
34
1.95
44856--44901
23
2.0
23
100
0
92
34
4
8
52
1.52
44970--45003
17
2.0
17
100
0
68
23
11
41
23
1.87
47255--47295
6
6.8
6
94
0
64
4
51
9
34
1.56
49628--49669
21
1.9
21
85
9
57
52
4
0
42
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62294--62358
33
1.9
34
87
9
98
46
1
3
49
1.27
62869--63013
78
1.9
78
85
1
202
45
3
10
40
1.55
62861--63023
78
2.1
78
80
5
197
44
3
9
42
1.53
66384--66452
31
2.2
31
87
5
95
37
8
21
31
1.84
67481--67556
31
2.4
31
82
2
89
30
26
7
35
1.85
67832--67936
2
55.0
2
66
25
50
43
3
4
47
1.42
67800--67845
16
2.9
16
80
0
56
43
2
13
41
1.55
67953--68009
23
2.4
24
80
13
73
42
14
1
42
1.55
76643--76730
31
2.9
31
81
5
99
43
9
5
42
1.60
77257--77322
31
2.1
31
85
0
87
42
4
12
40
1.62
78565--78618
27
2.0
27
100
0
108
40
14
11
33
1.82
79548--79603
29
1.9
29
82
7
69
53
0
10
35
1.36
80362--80404
22
2.0
21
82
13
52
25
23
23
27
2.00
80764--80815
19
2.7
19
79
8
61
59
0
1
38
1.08
80958--81005
20
2.4
20
78
0
51
33
14
22
29
1.94
80942--81412
119
3.9
119
92
0
746
32
17
15
33
1.92
81315--81363
20
2.5
20
89
0
71
26
16
24
32
1.96
84680--84739
23
2.7
22
82
5
75
20
25
30
25
1.99

Tables:   1

The End!