Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006431.1 Hibiscus syriacus cultivar Beakdansim tig00015525_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39017
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Found at i:1376 original size:13 final size:13
Alignment explanation
Indices: 1358--1406 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
1348 TCACAACCCG
*
1358 ACCCGACTCGTTT
1 ACCCGACCCGTTT
1371 ACCCGACCCGTTT
1 ACCCGACCCGTTT
*
1384 ACCCGACCCGTTG
1 ACCCGACCCGTTT
1397 ACCCGACCCG
1 ACCCGACCCG
1407 ACCCGTTGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.16, C:0.47, G:0.18, T:0.18
Consensus pattern (13 bp):
ACCCGACCCGTTT
Found at i:1392 original size:18 final size:18
Alignment explanation
Indices: 1384--1419 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1374 CGACCCGTTT
1384 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
1402 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
1420 TTGACCGTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.50, G:0.22, T:0.11
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:2736 original size:18 final size:18
Alignment explanation
Indices: 2710--2744 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2700 TCGAAAGGAA
*
2710 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
2728 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
2745 CCGGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:11954 original size:27 final size:26
Alignment explanation
Indices: 11914--11964 Score: 93
Period size: 27 Copynumber: 1.9 Consensus size: 26
11904 AGATCCAACA
11914 AAAAATAAACAAAAACAAAAAAAATT
1 AAAAATAAACAAAAACAAAAAAAATT
11940 AAAAATAAACAAAAAACAAAAAAAA
1 AAAAATAAAC-AAAAACAAAAAAAA
11965 AATCAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (26 bp):
AAAAATAAACAAAAACAAAAAAAATT
Found at i:11964 original size:20 final size:19
Alignment explanation
Indices: 11913--11955 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
11903 CAGATCCAAC
11913 AAAAAA-TAAACAAAAACAA
1 AAAAAATTAAA-AAAAACAA
11932 AAAAAATTAAAAATAAACAA
1 AAAAAATTAAAAA-AAACAA
11952 AAAA
1 AAAA
11956 CAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (19 bp):
AAAAAATTAAAAAAAACAA
Found at i:12185 original size:16 final size:16
Alignment explanation
Indices: 12166--12198 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
12156 GAAACATTTC
*
12166 AAAAGCTGAACAATTG
1 AAAAGATGAACAATTG
12182 AAAAGATGAACAATTG
1 AAAAGATGAACAATTG
12198 A
1 A
12199 GTCGAAAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (16 bp):
AAAAGATGAACAATTG
Found at i:12251 original size:36 final size:36
Alignment explanation
Indices: 12195--12329 Score: 209
Period size: 36 Copynumber: 3.8 Consensus size: 36
12185 AGATGAACAA
* *
12195 TTGAGTCGAAAGTGTTGATGCTTCCTTCCGTTCACT
1 TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACT
* *
12231 TTGAATCGAAAGTGTCGATGCTTCCTTTCGTTC-TT
1 TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACT
12266 CTTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACT
1 -TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACT
*
12303 TTGAATCGAAAGTGTTGATGCTTCCTT
1 TTGAATCGAAAGTGTCGATGCTTCCTT
12330 TCGTACTTCT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
35 1 0.01
36 88 0.98
37 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (36 bp):
TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACT
Found at i:12317 original size:72 final size:72
Alignment explanation
Indices: 12195--12340 Score: 256
Period size: 72 Copynumber: 2.0 Consensus size: 72
12185 AGATGAACAA
* *
12195 TTGAGTCGAAAGTGTTGATGCTTCCTTCCGTTCACTTTGAATCGAAAGTGTCGATGCTTCCTTTC
1 TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACTTTGAATCGAAAGTGTCGATGCTTCCTTTC
*
12260 GTTCTTC
66 GTACTTC
*
12267 TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACTTTGAATCGAAAGTGTTGATGCTTCCTTTC
1 TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACTTTGAATCGAAAGTGTCGATGCTTCCTTTC
12332 GTACTTC
66 GTACTTC
12339 TT
1 TT
12341 ATTCACCTTC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (72 bp):
TTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCACTTTGAATCGAAAGTGTCGATGCTTCCTTTC
GTACTTC
Found at i:14691 original size:4 final size:4
Alignment explanation
Indices: 14674--14710 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
14664 ACATTTATAC
* *
14674 ATGT ATGC ATGT ATGT ATGT ATGT TTGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
14711 AGCCAATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:15971 original size:2 final size:2
Alignment explanation
Indices: 15964--15988 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15954 ATAAGATTTG
15964 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15989 CTAATCTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16609 original size:60 final size:59
Alignment explanation
Indices: 16524--16685 Score: 157
Period size: 60 Copynumber: 2.7 Consensus size: 59
16514 ATTAAATTAG
* * * * * * *
16524 TCCTTAAACTTTTAAATATTTTAATTTTTTCTTCAAATTATGA-CACTAATTCTAAAATAA
1 TCCTTAAACTTTTGAACATTCTAATTTATCCAT-AAACTATGATC-CTAATTCTAAAATAA
* ** *
16584 TCCTTAAACTTTTGAACATTCTAATTCCATCCATAAACTATGATCCTCTTTCTAAAATAG
1 TCCTTAAACTTTTGAACATTCTAATT-TATCCATAAACTATGATCCTAATTCTAAAATAA
*
16644 TCCTTAAACTTTTGAACATACTAATTTCATCCCA-AAACTATG
1 TCCTTAAACTTTTGAACATTCTAATTT-AT-CCATAAACTATG
16686 GCTCTCTTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
60 78 0.92
61 7 0.08
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.41
Consensus pattern (59 bp):
TCCTTAAACTTTTGAACATTCTAATTTATCCATAAACTATGATCCTAATTCTAAAATAA
Found at i:16693 original size:60 final size:60
Alignment explanation
Indices: 16573--16706 Score: 191
Period size: 60 Copynumber: 2.2 Consensus size: 60
16563 ATGACACTAA
* *
16573 TTCTAAAATAATCCTTAAACTTTTGAACATTCTAATTCCATCCATAAACTATGATCCTCT
1 TTCTAAAATAGTCCTTAAACTTTTGAACATACTAATTCCATCCATAAACTATGATCCTCT
* *
16633 TTCTAAAATAGTCCTTAAACTTTTGAACATACTAATTTCATCCCA-AAACTATG-GCTCTCT
1 TTCTAAAATAGTCCTTAAACTTTTGAACATACTAATTCCAT-CCATAAACTATGATC-CTCT
*
16693 TTCTAAATTAGTCC
1 TTCTAAAATAGTCC
16707 CCAAATTTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 1 0.01
60 63 0.94
61 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (60 bp):
TTCTAAAATAGTCCTTAAACTTTTGAACATACTAATTCCATCCATAAACTATGATCCTCT
Found at i:17369 original size:75 final size:75
Alignment explanation
Indices: 17248--17387 Score: 201
Period size: 75 Copynumber: 1.9 Consensus size: 75
17238 CAGGTACAAT
* * *
17248 AATAAATAATAGTATTAATCTCCTCTTTTTTCCCCAATATGCTATTTAATATATTATCTTTTCCC
1 AATAAATAATAATATTAATCTCATCTTTTTTCCCCAATATGCTATTTAATACATTATCTTTTCCC
17313 CATATATAAC
66 CATATATAAC
* * * *
17323 AATAACTAATAATATTAATGTCATCTTCTTTT-CTCAATATGCTATTTATTACATTATCTTTTCC
1 AATAAATAATAATATTAATCTCATCTT-TTTTCCCCAATATGCTATTTAATACATTATCTTTTCC
17387 C
65 C
17388 AAATTATACA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 53 0.93
76 4 0.07
ACGTcount: A:0.32, C:0.19, G:0.03, T:0.46
Consensus pattern (75 bp):
AATAAATAATAATATTAATCTCATCTTTTTTCCCCAATATGCTATTTAATACATTATCTTTTCCC
CATATATAAC
Found at i:17838 original size:60 final size:60
Alignment explanation
Indices: 17721--17842 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 60
17711 TTGGGGCCAT
** * ** *
17721 TTTAGAATGAAGATTATAGTTTGGGGATGAAATTGAAATATTCAAAAGTTTGAGGACTAA
1 TTTAGAATGAAGATTATAGTTTAAGAATGAAATAAAAATATTCAAAAGTTAGAGGACTAA
*
17781 TTTAGAATGATAG-TTATAGTTTAAGAATGAAATAAAAATATTTAAAAGTTA-AGGGACTAA
1 TTTAGAATGA-AGATTATAGTTTAAGAATGAAATAAAAATATTCAAAAGTTAGA-GGACTAA
17841 TT
1 TT
17843 GAAAATGAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 1 0.02
60 50 0.94
61 2 0.04
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (60 bp):
TTTAGAATGAAGATTATAGTTTAAGAATGAAATAAAAATATTCAAAAGTTAGAGGACTAA
Found at i:23872 original size:4 final size:4
Alignment explanation
Indices: 23863--24429 Score: 1097
Period size: 4 Copynumber: 142.8 Consensus size: 4
23853 AAACTGCCCT
23863 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
23911 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
23959 TACA TACA TACA TACA TACA TACA T--A TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24005 TACA TACA TACA TACA TACA TACA TACA TAC- -ACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24051 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24099 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24147 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24195 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24243 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24291 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
24339 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
24387 TACA TACA TACA TACA TACA TACA TACA TACA TACA TATA TAC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC
24430 GTGTACAAAA
Statistics
Matches: 557, Mismatches: 2, Indels: 8
0.98 0.00 0.01
Matches are distributed among these distances:
2 4 0.01
4 553 0.99
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:25627 original size:20 final size:20
Alignment explanation
Indices: 25585--25627 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
25575 TTTTCAATGG
*
25585 TTTTTCTGCTCGAAACGTTT
1 TTTTTCTGCTCGAAACGTAT
*
25605 TTTTTCTGTTC-AAATCGTAT
1 TTTTTCTGCTCGAAA-CGTAT
25625 TTT
1 TTT
25628 CTGCTTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.16, C:0.16, G:0.12, T:0.56
Consensus pattern (20 bp):
TTTTTCTGCTCGAAACGTAT
Found at i:28918 original size:19 final size:20
Alignment explanation
Indices: 28883--28920 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
28873 TAATCAAATT
*
28883 AAAAATTAAAATGAAACCAA
1 AAAAATTAAAATCAAACCAA
28903 AAAAATTAAAA-CAAACCA
1 AAAAATTAAAATCAAACCA
28921 GGATTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (20 bp):
AAAAATTAAAATCAAACCAA
Found at i:31160 original size:22 final size:22
Alignment explanation
Indices: 31133--31177 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
31123 TTGCCAATGG
*
31133 TTTTTCTGCTCGAAACGTTTTT
1 TTTTTCTGCTCGAAACGTATTT
* *
31155 TTTTTCTGTTCGAATCGTATTT
1 TTTTTCTGCTCGAAACGTATTT
31177 T
1 T
31178 CTGCTTGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (22 bp):
TTTTTCTGCTCGAAACGTATTT
Found at i:31665 original size:18 final size:18
Alignment explanation
Indices: 31644--31682 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
31634 CAATAATTAA
31644 TAATAATAATAATATATT
1 TAATAATAATAATATATT
* * *
31662 TAATATTTATAATATTTT
1 TAATAATAATAATATATT
31680 TAA
1 TAA
31683 GCCCGGTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAATAATAATATATT
Found at i:31907 original size:37 final size:37
Alignment explanation
Indices: 31852--32456 Score: 498
Period size: 36 Copynumber: 16.1 Consensus size: 37
31842 GTAGGACTCG
* *
31852 AGATCGATTTGCTTCACTACTCTTTGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* *
31889 AGATGGATTTGCTTCACTACTCTTTGGTGAAGGATTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
31926 AGATGGATTTGCTTCACTACTCTTTGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
31963 AGATTGATTTTGCTTCACTACTCATT-GGTGAAGGCTTA
1 AGATGGA-TTTGCTTCACTACTC-TTCGGTGAAGGCTTA
* **** * * *
32001 AGATGG-CTTGGAGGACTTAATCATCATGCTCGGAAGGCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT--GAAGGCTTA
* *
32042 CTGATTGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
32080 AGATGGA-TTGCTTCACTCCTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * ** *
32116 ATATTGCATGGGGACTT-AAT-CATCATGCTCGG-G-AGGCTTA
1 AGA-TGGAT-TTG-CTTCACTAC-TC-T--TCGGTGAAGGCTTA
* *
32156 CTGATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
32194 AAATGGA-TTACTTCACTCCTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * ** *** * * * *
32230 AGATTGCTCAG-AGGACTTAATCATCATGCTCGGAGGCTTA
1 AGATGGATTTGCTTCAC-TACTCTTC--GGT-GAAGGCTTA
* *
32270 CTGATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTA
1 -AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
32308 AGATGGA-TTACTTCACTACTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
32344 GGATGAATTT-CTTTACTACTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
* * *
32380 GGATTG-TTTGCTTCACTACTCTTCGGTGAAAGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
32416 AGATGG-TTTGCTTCACTACTCTTCGGTGAAGGCTTA
1 AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
*
32452 GGATG
1 AGATG
32457 ACCCGGAGGA
Statistics
Matches: 452, Mismatches: 84, Indels: 65
0.75 0.14 0.11
Matches are distributed among these distances:
35 3 0.01
36 193 0.43
37 108 0.24
38 61 0.13
39 17 0.04
40 26 0.06
41 23 0.05
42 16 0.04
43 5 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (37 bp):
AGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTA
Found at i:32168 original size:114 final size:114
Alignment explanation
Indices: 31927--32547 Score: 721
Period size: 114 Copynumber: 5.5 Consensus size: 114
31917 GAAGGATTAA
* *
31927 GATGGATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATTGATTTTGCTTCACTACTCATT-GG
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGA--TTGCTTCACTACTC-TTCGG
* * *
31991 TGAAGGCTTAAGATGGCTTGGAGGACTTAATCATCATGCTCGGAAGGCTTACT
63 TGAAGGCTTAAGATTGCATGG-GGACTTAATCATCATGCTCGGGAGGCTTACT
* *
32044 GATTGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTCCTCTTCGGTGA
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTACTCTTCGGTGA
*
32109 AGGCTTAATATTGCATGGGGACTTAATCATCATGCTCGGGAGGCTTACT
66 AGGCTTAAGATTGCATGGGGACTTAATCATCATGCTCGGGAGGCTTACT
* * * *
32158 GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAAAATGGATTACTTCACTCCTCTTCGGTGA
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTACTCTTCGGTGA
*
32223 AGGCTTAAGATTGC-TCAGAGGACTTAATCATCATGCTC-GGAGGCTTACT
66 AGGCTTAAGATTGCAT--GGGGACTTAATCATCATGCTCGGGAGGCTTACT
* *
32272 GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGATTACTTCACTACTCTTCGGTGA
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTACTCTTCGGTGA
* * ** * *
32337 AGGCTTAGGA-TGAAT---TTCTTTA-C-T-ACT-CTTCGGTGAAGGCTTA-G
66 AGGCTTAAGATTGCATGGGGACTTAATCATCA-TGC-TCGG-G-AGGCTTACT
* * *
32381 GATTG-TTTGCTTCACTACTCTTCGGTGAAAGCTTAAGATGGTTTGCTTCACTACTCTTCGGTGA
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTACTCTTCGGTGA
* ** * ***
32445 AGGCTTAGGA-TGACCCGGAGGACTTAATTATCATGCTCAAAAGGCTTACT
66 AGGCTTAAGATTG-CATGG-GGACTTAATCATCATGCTCGGGAGGCTTACT
* * * *
32495 GATGGATTTGCTTCACTACTCTCCAGTGAAGGCTTCAGATGGTTTGCTTCACT
1 GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACT
32548 CTCAACATGA
Statistics
Matches: 441, Mismatches: 43, Indels: 42
0.84 0.08 0.08
Matches are distributed among these distances:
106 2 0.00
107 4 0.01
108 69 0.16
109 9 0.02
110 7 0.02
113 14 0.03
114 194 0.44
115 100 0.23
116 2 0.00
117 40 0.09
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (114 bp):
GATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATGGATTGCTTCACTACTCTTCGGTGA
AGGCTTAAGATTGCATGGGGACTTAATCATCATGCTCGGGAGGCTTACT
Done.