Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006432.1 Hibiscus syriacus cultivar Beakdansim tig00015529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124220

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8794--8827
7
4.9
7
100
0
68
73
0
26
0
0.83
20120--20188
29
2.4
29
87
0
93
33
5
14
46
1.68
20140--20195
29
1.9
29
92
0
94
41
3
10
44
1.56
20143--20206
29
2.2
29
82
0
74
45
3
9
42
1.52
21117--21167
21
2.7
18
70
18
50
49
0
0
50
1.00
23476--23893
210
2.0
209
91
4
673
46
7
8
38
1.62
34662--34691
14
2.1
14
100
0
60
56
0
0
43
0.99
34661--34695
18
1.9
18
88
11
54
54
0
0
45
0.99
39544--39643
29
3.4
29
82
6
130
42
11
9
38
1.72
40103--40127
2
12.5
2
100
0
50
52
0
0
48
1.00
42044--42194
60
2.5
60
77
8
155
33
26
5
33
1.81
46571--46628
2
29.0
2
100
0
116
50
0
0
50
1.00
46763--46841
31
2.5
31
81
4
106
37
13
12
35
1.83
47424--47501
31
2.5
31
82
10
106
32
11
15
41
1.83
47693--47765
24
3.0
24
97
0
137
34
21
28
15
1.94
50529--50585
29
2.0
29
82
6
71
40
12
15
31
1.85
61162--61209
2
24.0
2
100
0
96
50
0
0
50
1.00
68047--68083
18
2.1
18
100
0
74
48
24
0
27
1.51
71045--71079
18
1.9
18
88
11
54
54
5
17
22
1.64
71136--71179
21
2.0
22
86
4
63
47
0
20
31
1.50
71959--72262
149
2.0
149
98
0
581
27
17
20
34
1.95
74656--74690
3
11.7
3
100
0
70
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80135--80508
124
3.0
124
99
0
732
38
23
10
28
1.87
83169--84297
425
2.7
420
82
7
1141
27
12
21
38
1.89
83169--84345
426
2.8
418
81
7
1050
27
13
20
38
1.90
84972--85072
53
1.9
53
95
0
184
29
17
18
33
1.95
94120--94180
25
2.4
25
86
5
79
44
9
11
34
1.74
98258--98286
3
9.7
3
100
0
58
34
34
0
31
1.58
102055--102125
30
2.4
28
81
13
81
42
1
1
54
1.17
102182--102214
16
1.9
18
88
11
52
51
9
0
39
1.34
102300--102358
17
3.4
17
76
15
66
42
1
1
54
1.20
102268--102338
25
2.8
26
79
10
76
43
0
1
54
1.08
102296--102406
42
2.9
37
80
14
127
44
0
0
54
1.12
102373--102427
27
2.1
25
83
6
65
43
0
1
54
1.10
102751--102882
58
2.3
56
81
10
149
33
19
4
42
1.72
103195--103242
22
2.3
22
82
13
57
37
4
0
58
1.18
103299--103366
26
2.6
25
77
9
73
33
5
7
52
1.53
116199--116497
92
3.2
92
84
6
356
28
20
27
24
1.99
119878--119927
20
2.5
20
80
3
55
28
36
20
16
1.93
120651--120736
33
2.7
31
79
10
102
40
6
10
41
1.66
121077--121118
7
6.1
7
86
2
50
21
0
35
42
1.53

Tables:   1

The End!