Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006433.1 Hibiscus syriacus cultivar Beakdansim tig00015530_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101256

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1591--1628
2
19.0
2
100
0
76
50
0
0
50
1.00
6443--6518
32
2.4
32
95
0
143
19
13
25
42
1.87
16080--16119
19
2.1
19
95
0
71
32
5
7
55
1.50
22228--22286
23
2.7
21
80
19
84
30
16
16
35
1.92
22697--22739
20
2.2
20
87
8
61
18
0
9
72
1.11
22764--22796
12
2.6
13
90
4
50
36
12
6
45
1.66
24262--24298
17
2.1
18
85
14
51
32
10
5
51
1.60
24662--24698
17
2.1
18
85
14
51
32
10
5
51
1.60
24113--25347
415
3.0
403
94
3
2082
28
12
14
45
1.80
25077--25113
17
2.1
18
85
14
51
32
10
5
51
1.60
25658--25711
20
2.7
20
91
0
81
29
22
14
33
1.94
33205--33464
141
1.8
141
85
0
367
38
13
14
33
1.84
33415--33628
107
2.0
107
98
0
410
39
13
14
33
1.84
33996--34093
2
49.0
2
95
0
178
48
1
0
50
1.07
35521--35835
37
8.8
35
73
15
209
44
4
9
41
1.57
35676--35700
12
2.1
12
100
0
50
44
0
8
48
1.32
35525--35761
105
2.2
105
80
10
257
43
3
10
43
1.55
35521--35815
73
4.1
71
77
11
271
44
4
9
42
1.56
35868--35898
10
3.0
10
90
9
53
0
0
9
90
0.46
35868--35898
11
2.9
11
95
4
55
0
0
9
90
0.46
37198--37247
20
2.5
20
72
18
50
24
4
4
68
1.24
37285--37320
15
2.4
15
85
0
54
25
8
0
66
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37403--37432
6
5.0
6
100
0
60
33
0
0
66
0.92
42363--42422
26
2.3
26
97
0
111
31
15
21
31
1.94
43771--43819
22
2.2
23
88
3
73
32
14
24
28
1.94
44886--45034
36
4.3
36
79
13
129
42
5
10
42
1.61
45038--45218
73
2.5
71
79
8
184
43
2
9
44
1.50
46197--46241
19
2.3
20
80
7
56
17
13
2
66
1.34
48037--48361
44
7.5
44
75
8
220
33
15
23
28
1.95
48281--48379
44
2.2
44
94
0
180
35
12
20
32
1.89
50423--50480
29
2.0
29
83
10
73
37
8
18
34
1.82
51684--51731
24
2.0
24
100
0
96
29
12
16
41
1.85
57522--57556
17
2.0
18
88
5
54
37
8
5
48
1.58
60336--60360
12
2.1
12
100
0
50
40
0
8
52
1.31
63004--63100
3
31.7
3
93
4
167
32
1
0
65
0.99
65276--65326
25
2.0
25
84
3
66
37
1
5
54
1.36
69133--69230
36
2.7
35
78
4
97
37
18
12
31
1.88
69168--69239
36
2.0
36
86
0
99
34
22
8
34
1.84
69335--69413
21
4.1
21
67
20
55
21
17
16
44
1.87
69338--69424
36
2.4
36
96
0
156
24
20
16
39
1.92
69374--69589
65
3.3
64
82
6
270
25
19
12
41
1.87
69375--69584
67
3.2
65
83
4
269
25
20
12
41
1.88
69589--69946
131
2.7
131
82
3
405
26
29
18
25
1.98
70131--70180
3
16.3
3
95
4
91
36
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71624--71700
3
25.3
3
97
2
145
35
0
0
64
0.93
73384--73413
5
6.2
5
92
7
53
16
0
0
83
0.65
74160--74193
18
1.9
17
88
5
50
41
0
0
58
0.98
75466--75563
44
2.2
44
89
3
144
31
15
22
30
1.95
75914--75954
18
2.3
18
86
0
55
51
7
2
39
1.43
76221--76245
13
1.9
13
100
0
50
48
16
0
36
1.46
76360--76396
16
2.3
16
90
0
56
59
21
0
18
1.38
77856--77892
17
2.1
18
90
5
58
70
5
0
24
1.08
79612--79666
26
2.1
26
100
0
110
21
27
12
38
1.90
84177--84273
44
2.2
44
86
0
131
29
16
21
31
1.95
87689--87765
3
25.3
3
94
2
136
35
1
0
63
1.03
89217--89257
20
2.0
21
85
4
57
36
2
2
58
1.24
89978--90014
15
2.7
15
88
12
53
24
5
8
62
1.44
100558--100604
12
3.8
12
88
11
69
89
0
10
0
0.49
100558--100595
16
2.4
16
95
0
67
92
0
7
0
0.40
100922--100960
15
2.5
16
91
4
62
33
7
5
53
1.51

Tables:   1

The End!