genome.fa.s6434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006434.1 Hibiscus syriacus cultivar Beakdansim tig00015533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105000

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3123--3164	22	1.9	22	90	9	68	14	11	4	69	1.34
3482--3524	8	5.4	8	86	8	61	86	11	2	0	0.67
3485--3524	17	2.4	17	91	0	62	85	12	2	0	0.71
3482--3531	17	3.1	16	81	13	59	82	14	4	0	0.82
7753--7794	22	1.9	22	90	9	68	14	11	4	69	1.34
8250--8345	23	4.3	22	80	11	90	23	19	25	31	1.98
13366--13454	41	2.2	41	81	4	99	26	12	22	38	1.90
13471--13650	82	2.2	82	80	10	190	33	15	15	35	1.89
16716--16830	43	2.6	44	81	1	142	26	17	16	39	1.91
16792--16863	33	2.2	33	82	2	83	34	15	15	34	1.89
17578--17650	2	37.0	2	97	2	139	50	0	0	49	1.00
18489--18544	24	2.3	24	100	0	112	28	17	16	37	1.91
19906--20001	31	3.1	31	86	3	122	27	7	11	54	1.62
22259--22304	18	2.6	18	96	0	83	32	23	13	30	1.93
28366--28411	21	2.2	21	84	7	58	28	2	2	67	1.14
28642--28706	23	2.8	23	88	0	76	18	20	27	33	1.96
28649--28711	23	2.7	23	87	0	81	20	17	28	33	1.95
34978--35013	18	2.1	17	89	5	54	38	13	19	27	1.90
41924--41961	12	3.2	12	81	3	51	47	0	0	52	1.00
41906--41963	23	2.4	23	82	5	71	51	0	0	48	1.00
41912--41987	22	3.8	21	72	16	63	47	0	1	51	1.09
41945--41986	22	1.9	22	95	0	75	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41978--42012	18	1.9	18	88	0	52	60	0	0	40	0.97
41976--42029	23	2.3	23	87	6	74	57	0	1	40	1.09
41929--42059	31	4.3	31	74	16	103	48	0	1	49	1.10
42164--42214	23	2.3	22	86	3	66	54	0	0	45	0.99
49249--49297	18	2.7	18	78	15	55	10	12	4	73	1.22
63758--63790	7	4.7	7	89	10	50	24	0	3	72	0.98
63741--63793	25	2.1	26	85	3	72	24	5	3	66	1.31
68152--68220	30	2.2	30	82	15	86	36	4	17	42	1.69
68162--68220	30	2.0	30	93	6	102	33	5	16	44	1.70
68300--68398	21	4.7	21	80	14	114	24	34	18	23	1.96
68422--68492	20	3.5	20	77	7	72	22	25	19	32	1.98
69510--69568	30	2.0	30	87	9	86	35	6	13	44	1.71
69648--69808	21	7.7	21	91	1	261	21	37	20	20	1.94
69829--69901	20	3.7	20	96	0	128	19	27	20	32	1.97
70014--70053	20	1.9	21	85	10	55	37	37	10	15	1.80
70724--70783	30	2.0	28	87	9	84	36	5	15	43	1.68
70724--70783	29	2.0	30	90	6	95	36	5	15	43	1.68
70863--70926	21	3.0	21	95	0	110	21	37	18	21	1.94
70990--71057	20	3.3	20	76	11	75	19	26	23	30	1.98
72751--72777	2	13.5	2	100	0	54	48	0	0	51	1.00
72864--72929	34	1.9	34	82	11	82	31	0	15	53	1.42
73960--74037	33	2.4	33	85	8	97	38	0	1	60	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74177--74230	17	3.2	17	72	0	54	31	0	3	64	1.11
75760--75807	21	2.3	21	85	0	60	25	39	12	22	1.89
75811--75904	21	4.4	20	92	5	116	18	35	25	21	1.95
76427--76504	39	2.0	39	80	12	88	58	2	1	37	1.20
76427--76523	33	2.9	34	82	3	124	55	3	3	38	1.31
76425--76530	34	3.2	33	80	8	124	54	3	2	38	1.33
76920--77264	127	2.7	127	95	2	613	31	20	24	22	1.98
77192--77337	72	2.0	72	97	0	274	33	23	24	18	1.97
77066--77465	200	2.0	199	97	0	755	32	20	25	21	1.97
77264--77873	128	4.8	128	92	1	1035	31	20	25	22	1.98
77264--77874	256	2.4	256	97	0	1150	31	20	25	22	1.98
77945--77985	8	5.2	8	82	5	57	36	29	0	34	1.58
80984--81022	12	3.2	12	85	3	51	46	0	0	53	1.00
81630--81680	25	2.0	26	96	3	95	37	31	19	11	1.88
83200--83224	8	3.1	8	100	0	50	24	16	12	48	1.79
87435--87472	20	1.9	19	89	5	58	28	18	23	28	1.98
96163--96218	25	2.2	25	83	0	67	25	12	32	30	1.92
98210--98256	2	24.5	2	87	8	71	48	0	0	51	1.00
101161--101213	26	2.1	26	86	10	74	30	20	18	30	1.97

Tables:   1

The End!