genome.fa.s6435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006435.1 Hibiscus syriacus cultivar Beakdansim tig00015541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203184

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4485--4514	3	10.0	3	100	0	60	66	0	0	33	0.92
8047--8090	20	2.1	22	83	8	56	29	0	25	45	1.54
8044--8085	14	3.1	14	83	13	52	26	0	30	42	1.55
8044--8103	27	2.2	27	82	5	68	28	1	28	41	1.66
8219--8279	31	2.0	31	96	0	113	44	13	13	29	1.81
8838--8885	26	1.9	25	83	8	62	45	12	2	39	1.54
8896--8949	26	2.1	26	82	6	65	31	1	24	42	1.65
9073--9124	15	3.4	15	68	5	50	51	11	7	28	1.65
9066--9126	31	2.0	31	100	0	122	45	11	13	29	1.78
9681--9728	26	1.9	25	83	8	62	45	12	2	39	1.54
9917--9968	15	3.4	15	68	5	50	51	11	7	28	1.65
9910--9970	31	2.0	31	100	0	122	45	11	13	29	1.78
7407--12084	844	5.6	847	94	3	7900	36	12	14	36	1.84
10522--10569	26	1.9	25	83	8	62	45	12	2	39	1.54
10577--10628	14	3.8	13	75	7	50	32	0	25	42	1.55
10575--10628	28	1.9	28	88	7	83	31	0	27	40	1.57
10751--10808	31	2.0	29	90	10	91	46	12	13	27	1.79
11293--11325	2	16.5	2	100	0	66	51	0	0	48	1.00
11431--11493	20	3.0	20	72	6	54	28	0	26	44	1.55
12890--12932	21	2.0	23	86	9	63	53	0	6	39	1.28
14035--14073	19	2.0	20	85	5	53	38	12	2	46	1.56
14149--14218	25	2.8	25	93	2	113	37	10	14	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14722--14767	21	2.1	22	88	4	67	50	4	17	28	1.65
14782--14808	3	9.0	3	100	0	54	33	0	0	66	0.92
15561--15600	16	2.5	17	84	12	57	40	0	2	57	1.12
24547--24576	15	1.9	16	93	6	53	63	0	0	36	0.95
25532--25576	20	2.2	20	100	0	90	22	15	24	37	1.93
25836--25870	3	12.0	3	87	6	54	62	0	0	37	0.95
25838--25870	17	1.9	17	93	0	57	63	0	0	36	0.95
30068--30152	20	4.1	20	74	7	62	15	24	36	23	1.93
33960--33999	21	1.9	21	85	10	55	37	7	2	52	1.43
36470--36550	7	11.9	7	71	15	53	45	34	0	19	1.51
36463--36550	35	2.6	34	74	12	90	45	32	0	21	1.52
38980--39474	95	5.1	95	84	4	476	40	13	22	23	1.89
39118--39521	95	4.3	93	83	4	375	41	13	22	23	1.88
42055--42128	35	2.1	35	90	5	114	50	9	22	17	1.75
49916--49970	28	2.0	28	82	7	67	63	14	0	21	1.30
51544--51573	14	2.1	14	93	0	51	83	0	13	3	0.77
74378--74407	5	6.0	5	100	0	60	0	20	0	80	0.72
82928--82972	23	2.0	23	90	0	72	24	26	26	22	2.00
84295--84329	19	1.9	17	88	11	52	60	0	37	2	1.12
89891--90187	150	2.0	149	94	0	522	35	20	16	27	1.94
91238--91272	19	1.9	17	88	11	52	60	0	37	2	1.12
92222--92260	16	2.4	17	83	12	55	46	5	7	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93462--93538	31	2.5	31	87	4	111	48	15	11	24	1.79
94034--94101	7	9.7	7	100	0	136	41	29	14	14	1.86
94353--94433	21	3.9	21	98	0	153	37	24	22	16	1.93
94591--94635	20	2.2	20	92	0	72	26	22	13	37	1.91
95442--95466	12	2.1	12	100	0	50	76	0	8	16	1.02
97663--97698	18	1.9	19	88	5	56	22	5	22	50	1.70
100730--100757	14	2.0	14	100	0	56	57	0	0	42	0.99
111221--111265	23	2.0	23	90	0	72	24	26	26	22	2.00
111233--111548	150	2.1	149	94	1	553	34	21	17	26	1.95
112591--112625	19	1.9	17	88	11	52	60	0	37	2	1.12
119535--119569	19	1.9	17	88	11	52	60	0	37	2	1.12
120516--120554	16	2.4	17	83	12	55	46	5	7	41	1.55
121761--121837	31	2.5	31	87	4	111	48	16	11	23	1.79
122333--122386	7	7.7	7	100	0	108	40	29	14	14	1.86
122638--122697	21	2.9	21	97	0	111	36	25	21	16	1.94
122855--122899	20	2.2	20	92	0	72	26	22	13	37	1.91
123704--123728	12	2.1	12	100	0	50	76	0	8	16	1.02
125933--125968	18	1.9	19	88	5	56	22	5	22	50	1.70
128950--129018	30	2.3	29	83	11	86	42	1	0	56	1.08
128972--129037	26	2.5	24	75	15	60	40	0	0	59	0.98
128970--129037	25	2.6	25	76	17	68	39	0	0	60	0.97
129181--129247	31	2.2	31	94	0	116	47	8	10	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129709--129760	16	3.2	17	72	22	58	42	0	19	38	1.51
135781--135810	16	1.9	16	93	6	53	43	0	3	53	1.17
137439--137524	29	3.0	29	89	0	136	53	8	2	36	1.43
138388--138413	3	8.7	3	100	0	52	0	34	0	65	0.93
138412--138440	3	9.7	3	100	0	58	31	34	0	34	1.58
148573--148625	21	2.5	21	81	6	72	20	26	18	33	1.96
148615--148666	20	2.5	21	87	3	70	40	17	21	21	1.91
148612--148748	41	3.3	41	75	11	111	32	19	17	30	1.95
148676--148751	21	3.6	21	76	5	73	25	21	15	38	1.92
148738--148793	20	2.7	21	80	8	69	41	17	21	19	1.91
149332--149398	19	3.5	19	83	2	80	49	23	16	10	1.77
149394--149591	19	11.1	19	74	17	174	11	22	20	44	1.84
149399--149566	33	4.9	33	87	7	219	10	22	22	44	1.83
149487--149542	14	3.6	14	74	21	58	10	25	25	39	1.87
149394--149529	71	1.9	71	93	0	236	11	21	22	45	1.82
150480--150516	15	2.5	15	100	0	74	16	0	16	67	1.23
153176--153212	14	2.6	14	87	12	58	29	0	21	48	1.50
153337--153393	14	3.7	14	75	20	60	43	22	24	8	1.81
153329--153408	33	2.4	33	95	0	142	45	20	22	12	1.84
153404--153534	19	7.7	19	66	23	94	14	23	19	42	1.88
153408--153534	33	3.9	32	87	8	193	14	23	18	42	1.88
153401--153533	66	2.0	66	97	0	248	16	23	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154753--154797	21	2.1	21	87	0	63	31	28	24	15	1.96
155382--155416	18	1.9	18	88	11	54	54	5	17	22	1.64
156303--156606	149	2.0	149	98	0	590	26	17	21	34	1.95
156585--156629	23	2.0	23	86	0	63	20	24	28	26	1.99
159066--159102	12	3.1	12	100	0	74	0	27	0	72	0.84
159277--159330	24	2.2	24	90	0	81	40	20	16	22	1.91
160110--160161	21	2.5	21	87	3	70	38	17	23	21	1.93
160146--160237	20	4.6	20	73	2	76	39	21	18	20	1.93
160451--160538	20	4.4	20	80	5	115	38	23	21	15	1.92
160569--160642	19	4.5	16	83	16	66	13	20	18	47	1.82
160565--160632	19	3.8	19	87	12	101	13	22	17	47	1.82
162671--162724	20	2.7	20	88	0	81	37	22	24	16	1.94
162728--162815	14	5.6	14	72	21	68	51	21	15	11	1.75
162711--162833	33	3.8	33	91	2	194	47	22	17	12	1.80
162711--162833	65	1.9	66	89	5	196	47	22	17	12	1.80
162829--162892	19	3.6	19	74	20	66	14	20	20	45	1.85
162877--162960	20	4.2	20	81	1	98	17	22	21	38	1.94
162886--162971	40	2.2	40	97	0	163	17	20	23	38	1.93
162886--162971	20	4.3	20	80	11	95	17	20	23	38	1.93
163453--163497	18	2.5	18	88	0	72	13	15	44	26	1.83
164817--164875	20	3.0	20	87	0	73	42	22	18	16	1.89
165137--165180	22	2.0	22	86	0	61	22	15	40	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165369--165420	20	2.6	20	93	0	86	25	21	28	25	1.99
165348--165462	20	5.7	19	77	9	77	24	17	24	33	1.96
165389--165483	41	2.3	41	80	3	102	21	20	23	35	1.96
167582--167625	21	2.0	21	82	13	52	31	6	15	45	1.73
187128--187209	40	2.0	40	100	0	164	23	17	26	32	1.96
187378--187452	24	3.2	24	62	24	59	37	4	20	38	1.71
187314--187486	47	3.8	47	89	3	248	37	7	21	32	1.82

Tables:   1

The End!