Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006436.1 Hibiscus syriacus cultivar Beakdansim tig00015542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78459

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3788--3813
7
3.7
7
100
0
52
38
0
0
61
0.96
6388--6476
44
2.0
44
100
0
178
24
17
13
43
1.85
12211--12243
2
16.5
2
93
0
57
48
3
0
48
1.17
15788--15825
18
2.1
18
95
0
67
26
10
42
21
1.85
18691--18744
23
2.5
22
74
17
58
51
3
3
40
1.37
21743--22352
303
2.0
302
97
0
1157
25
21
14
38
1.92
24512--24542
14
2.2
14
94
0
53
51
0
0
48
1.00
34676--34705
10
3.0
10
90
0
51
56
10
3
30
1.48
37476--37529
3
18.0
3
100
0
108
66
0
0
33
0.92
47903--47964
30
2.0
31
87
3
90
14
20
25
38
1.91
53792--53827
2
18.0
2
88
0
54
47
2
2
47
1.31
54064--54093
2
15.0
2
100
0
60
50
0
0
50
1.00
55897--55975
29
2.8
28
84
1
95
43
5
3
48
1.43
56106--56177
30
2.4
31
83
4
85
47
5
2
44
1.41
56471--56512
3
13.3
3
95
5
66
66
0
0
33
0.92
62901--62964
27
2.4
28
84
5
78
42
1
1
54
1.19
65122--65150
15
1.9
15
100
0
58
24
20
0
55
1.44
73126--73183
28
2.0
28
90
6
89
27
27
10
34
1.89

Tables:   1

The End!