genome.fa.s6437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006437.1 Hibiscus syriacus cultivar Beakdansim tig00015544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85069

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12457--12510	22	2.5	22	90	0	90	72	11	5	11	1.28
12756--12802	23	2.0	25	87	8	71	53	2	10	34	1.48
17849--17922	30	2.5	31	82	6	98	33	5	22	37	1.77
19247--19409	38	4.4	38	82	6	174	26	22	24	25	2.00
19484--19515	12	2.7	12	90	0	55	34	15	25	25	1.95
19753--19818	18	3.7	18	79	0	78	42	4	18	34	1.70
19754--19830	6	12.8	6	70	10	50	41	2	19	36	1.65
19755--19824	36	1.9	36	91	0	113	40	2	20	37	1.67
19772--19830	18	3.3	18	74	9	57	38	1	20	38	1.63
22734--22758	13	1.9	13	100	0	50	44	0	8	48	1.32
22913--22959	14	3.3	14	75	24	53	34	2	2	61	1.20
23045--23091	23	2.1	23	84	7	62	51	0	0	48	1.00
23045--23107	23	2.8	22	77	13	58	47	0	3	49	1.17
36774--36961	20	9.4	21	73	12	114	38	23	11	26	1.89
36849--36960	19	5.7	19	76	13	102	36	21	12	29	1.90
36790--36961	60	2.9	61	82	6	176	40	22	11	26	1.88
36829--36961	40	3.3	41	80	10	141	38	21	12	27	1.89
37117--37156	16	2.5	16	83	0	53	27	5	0	67	1.11
37750--37783	12	2.8	12	90	0	50	55	29	0	14	1.40
37909--37962	24	2.2	24	90	0	81	22	18	18	40	1.91
38729--38811	20	4.2	20	93	1	132	49	20	19	10	1.78
39363--39493	20	6.6	20	80	8	133	19	13	24	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39387--39516	60	2.2	59	79	5	136	22	16	23	38	1.93
41003--41163	64	2.5	64	83	5	191	34	16	21	27	1.94
42265--42350	30	2.9	30	82	1	102	16	20	27	34	1.94
43688--43763	36	2.1	37	87	7	111	47	2	1	48	1.24
44683--44738	21	2.7	21	97	0	103	19	25	28	26	1.99
46991--47060	3	24.0	3	77	11	74	41	0	0	58	0.98
46991--47059	18	3.8	18	85	12	88	42	0	0	57	0.98
46988--47072	14	5.6	15	77	15	61	44	0	0	55	0.99
47008--47072	22	3.0	22	84	10	82	43	0	0	56	0.99
47739--47766	13	2.2	13	100	0	56	7	35	42	14	1.73
48307--48388	27	3.2	27	63	30	70	26	10	4	57	1.53
48309--48404	50	1.9	50	100	0	192	27	9	5	58	1.51
48448--48498	23	2.2	23	86	10	68	45	3	0	50	1.20
55764--56188	83	5.1	83	95	0	742	27	12	21	37	1.90
57390--57561	74	2.3	75	85	4	222	34	16	20	29	1.94
58445--58601	54	2.9	54	85	0	206	37	15	22	24	1.93
58952--59006	22	2.5	22	90	0	92	32	10	16	40	1.83
59672--60083	76	5.4	76	98	0	752	21	21	22	34	1.97
59672--60083	153	2.7	152	96	1	761	21	21	22	34	1.97
60238--60310	3	24.0	3	80	5	76	42	0	0	57	0.98
60991--61018	13	2.2	13	100	0	56	7	35	42	14	1.73
61559--61654	50	1.9	50	95	0	174	28	7	5	59	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61702--61750	23	2.2	23	82	13	59	38	4	0	57	1.18
62324--62365	2	21.0	2	100	0	84	50	0	0	50	1.00
67121--67224	45	2.3	46	88	6	151	10	4	56	27	1.53
67250--67370	36	3.3	36	81	3	134	23	5	46	24	1.74
67245--67369	39	3.3	39	77	6	139	23	5	46	24	1.73
67401--67476	39	2.0	37	82	12	75	21	5	50	23	1.69
67290--67512	117	1.9	114	83	6	288	21	7	46	25	1.76
67413--67595	45	4.4	40	72	14	127	15	8	47	28	1.74
67452--67654	90	2.3	90	85	1	255	18	8	44	29	1.79
67452--67654	45	4.5	45	81	2	210	18	8	44	29	1.79
79963--80008	22	2.0	23	84	12	60	63	6	15	15	1.50
79956--80061	30	3.5	30	80	10	117	59	8	15	16	1.59

Tables:   1

The End!