genome.fa.s6438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006438.1 Hibiscus syriacus cultivar Beakdansim tig00015548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60155

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458--502	11	4.1	11	82	5	56	71	4	11	13	1.29
458--499	22	1.9	22	90	9	68	69	4	11	14	1.34
4744--4781	20	1.9	20	94	0	67	0	5	13	81	0.85
4736--4778	9	4.7	9	82	5	59	0	4	11	83	0.78
5100--5144	11	4.1	11	82	5	56	71	4	11	13	1.29
5100--5141	22	1.9	22	90	9	68	69	4	11	14	1.34
11559--11610	2	26.0	2	100	0	104	50	0	0	50	1.00
14711--14801	23	4.0	22	77	7	83	32	20	20	25	1.97
16273--16323	19	2.7	19	85	8	70	25	15	35	23	1.94
16166--16325	65	2.5	65	84	3	198	25	16	27	30	1.96
16985--17028	18	2.5	17	82	7	61	54	27	0	18	1.44
16996--17032	18	2.0	19	94	5	67	59	27	0	13	1.35
24283--24394	55	2.0	55	100	0	224	33	26	18	21	1.97
26788--26887	24	4.2	24	71	5	85	47	16	13	24	1.81
26781--26889	48	2.3	48	75	0	110	48	15	12	22	1.79
29397--29479	19	4.6	19	82	14	113	18	34	28	18	1.94
29421--29460	14	2.9	14	88	0	62	20	35	27	17	1.95
29403--29487	33	2.6	33	90	0	134	20	34	28	17	1.95
30905--30983	39	2.0	39	100	0	158	44	7	7	40	1.61
40037--40076	14	2.9	14	96	0	71	2	45	22	30	1.66
40996--41022	14	1.9	14	100	0	54	22	40	29	7	1.81
41009--41062	10	5.4	9	83	16	63	24	35	29	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41009--41062	20	2.7	20	94	0	99	24	35	29	11	1.90
41034--41120	33	2.6	33	87	0	111	25	27	34	12	1.92
41047--41129	33	2.5	33	86	3	105	26	26	36	10	1.89
41133--41246	29	3.9	29	94	0	192	22	29	35	11	1.89
41275--41299	12	2.1	12	100	0	50	16	36	8	40	1.77
41317--41373	29	2.0	29	96	0	105	21	31	33	14	1.92
42274--42332	13	4.5	13	73	14	59	25	16	0	57	1.39
42363--42432	19	3.7	18	79	9	77	34	18	5	41	1.74
44179--44236	30	1.9	30	86	6	82	41	24	3	31	1.71
44179--44247	30	2.3	31	82	7	79	42	23	2	31	1.69
45354--45409	29	1.9	29	85	0	76	30	17	8	42	1.80
55007--55041	18	1.9	18	94	0	61	48	0	5	45	1.26
54996--55055	20	2.9	22	76	21	65	50	1	6	41	1.39
55046--55095	2	25.0	2	100	0	100	50	0	0	50	1.00
55109--55174	22	2.9	23	90	4	107	37	3	9	50	1.50
55204--55231	3	9.3	3	100	0	56	32	0	0	67	0.91
56759--56920	53	3.1	53	91	0	270	35	19	17	27	1.94
59969--60029	19	3.1	19	80	7	68	27	13	27	31	1.94

Tables:   1

The End!