genome.fa.s644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000644.1 Hibiscus syriacus cultivar Beakdansim tig00001245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53019

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7415--7466	26	2.0	25	81	7	59	28	1	11	57	1.44
8583--8647	25	2.6	25	97	2	123	44	9	16	29	1.79
10406--10436	2	15.5	2	100	0	62	48	0	0	51	1.00
16626--16743	51	2.3	51	94	0	200	42	8	7	41	1.64
20164--20215	21	2.5	21	78	6	61	17	25	21	36	1.94
20206--20257	21	2.5	21	87	3	70	38	17	23	21	1.93
20280--20340	20	3.0	20	76	7	61	21	18	18	42	1.89
20330--20423	20	4.7	20	85	2	134	39	19	21	20	1.93
20191--20449	41	6.3	41	69	14	133	32	18	18	29	1.96
20967--21021	19	2.8	20	86	2	85	43	21	21	12	1.86
21050--21178	33	3.9	33	90	1	177	13	22	20	43	1.87
21052--21206	20	8.8	19	64	22	70	14	21	18	46	1.83
22890--23265	94	4.1	93	92	2	571	22	12	18	47	1.81
23337--23362	12	2.2	12	100	0	52	0	7	19	73	1.07
23364--23453	19	4.9	19	75	15	91	11	21	21	46	1.81
23854--23933	42	1.9	42	84	0	106	21	38	17	22	1.93
25323--25358	14	2.6	14	95	0	63	33	0	22	44	1.53
25483--25539	14	3.7	14	72	20	51	43	21	24	10	1.83
25465--25577	33	3.4	33	93	0	190	46	21	22	10	1.82
25465--25558	19	5.5	19	69	23	82	44	20	23	11	1.84
25583--25733	19	8.7	19	61	21	62	11	23	19	45	1.84
25587--25713	33	3.8	33	94	0	209	11	22	19	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25707--25779	20	3.6	20	67	10	58	26	19	21	32	1.97
26566--26613	24	2.0	24	100	0	96	50	12	4	33	1.59
28066--28090	12	2.1	12	100	0	50	0	28	0	72	0.86
28265--28318	24	2.2	24	90	0	81	40	20	16	22	1.91
29042--29195	20	7.7	20	83	4	157	25	20	25	29	1.99
29230--29278	21	2.3	22	75	6	57	42	16	20	20	1.89
34977--35146	23	7.8	23	77	11	189	21	20	21	37	1.95
34968--35159	42	4.5	43	80	10	189	22	20	21	35	1.96
34977--35150	65	2.7	65	93	0	303	21	20	21	36	1.95
35884--35954	21	3.4	21	78	0	79	23	19	23	32	1.98
35941--36074	20	6.6	20	80	10	164	23	23	18	34	1.96
35905--36076	82	2.1	82	85	8	226	25	22	20	31	1.98
35960--36179	41	5.3	41	93	3	277	23	23	21	31	1.98
35980--36199	21	10.6	21	84	9	272	23	23	22	30	1.99
39508--39536	3	9.7	3	100	0	58	31	0	0	68	0.89
40650--40694	20	2.2	21	88	4	65	28	28	15	26	1.96
40753--40871	20	5.9	20	94	0	211	25	13	19	42	1.87
40813--41012	97	2.1	97	92	0	328	27	15	20	38	1.92
40910--40968	20	3.0	20	89	0	91	25	15	16	42	1.88
40987--41052	20	3.3	20	97	0	123	31	15	22	30	1.95
40796--41201	117	3.5	115	77	9	373	28	15	19	37	1.92
41124--41241	20	5.9	20	97	0	227	25	15	19	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41279--41464	77	2.4	77	93	0	320	38	18	12	30	1.88
43463--43522	26	2.3	26	94	0	102	36	26	13	23	1.92
47954--47987	18	1.9	17	88	5	50	64	5	0	29	1.17

Tables:   1

The End!