Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006441.1 Hibiscus syriacus cultivar Beakdansim tig00015559_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57094

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2384--2422
18
2.1
19
95
4
71
33
0
15
51
1.44
3496--3818
161
2.0
161
96
2
596
34
11
24
29
1.90
6443--6480
15
2.5
15
87
12
51
42
7
2
47
1.46
12441--12487
18
2.6
18
96
0
85
63
12
10
12
1.52
16274--16308
18
1.9
18
88
11
54
28
11
2
57
1.48
21736--21844
14
7.9
14
72
11
64
47
26
1
23
1.62
21736--21847
7
16.1
7
73
1
55
46
27
1
24
1.63
21736--21847
21
5.4
20
74
4
80
46
27
1
24
1.63
25671--25718
23
2.1
23
100
0
96
50
16
0
33
1.46
26063--26316
43
5.8
42
76
10
127
26
18
6
48
1.71
26152--26639
86
5.7
83
76
13
375
27
17
6
47
1.73
26164--26586
43
9.8
42
78
8
345
26
18
6
47
1.72
26171--26647
43
11.1
42
73
12
157
27
17
6
48
1.72
28156--28215
9
6.3
9
79
11
66
16
26
28
28
1.97
28155--28209
19
2.8
19
91
2
83
18
23
29
29
1.98
28217--28254
17
2.2
17
100
0
76
18
47
23
10
1.79
28201--28261
22
2.6
23
82
12
79
16
42
24
16
1.88
35437--35496
9
6.3
9
79
11
66
16
26
28
28
1.97
35436--35494
19
3.1
19
92
2
91
18
23
28
28
1.98
35493--35557
22
3.0
22
95
0
112
16
47
23
12
1.80
41990--42061
2
36.5
2
91
2
119
54
0
0
45
0.99
46265--46328
32
2.1
31
91
5
103
40
15
14
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49703--49737
17
2.1
17
100
0
70
28
11
14
45
1.79
52445--52479
18
1.9
18
94
0
61
28
11
20
40
1.87
52842--52926
41
2.1
41
93
0
143
30
21
16
31
1.95
54408--54452
3
14.7
3
95
4
81
64
0
35
0
0.94
55269--55324
6
9.3
6
80
0
67
32
25
17
25
1.97
55269--55324
18
3.1
18
84
0
76
32
25
17
25
1.97

Tables:   1

The End!