genome.fa.s6443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006443.1 Hibiscus syriacus cultivar Beakdansim tig00015564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132563

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375--511	9	15.2	9	78	13	88	10	9	0	79	0.93
379--502	8	15.5	8	75	20	91	11	9	0	79	0.95
405--513	29	3.9	29	74	17	104	10	9	0	80	0.90
430--510	14	5.6	14	79	16	76	11	8	0	80	0.91
375--510	54	2.5	53	85	9	186	11	9	0	79	0.94
379--511	44	3.0	44	84	9	171	10	9	0	79	0.93
391--511	15	7.8	15	77	15	113	10	9	0	79	0.94
378--511	46	2.9	47	84	10	172	10	9	0	79	0.93
5511--5565	24	2.3	24	90	0	83	25	40	0	34	1.56
12106--12162	20	2.8	20	94	0	96	49	10	19	21	1.78
13624--13686	33	1.9	33	93	0	108	33	4	31	30	1.78
14886--14924	19	2.1	19	85	0	51	35	2	0	61	1.10
15880--15964	43	2.0	43	86	4	118	21	4	20	54	1.63
16328--16375	10	5.2	10	75	14	50	35	2	0	62	1.07
16323--16375	18	2.9	18	76	18	56	37	1	0	60	1.08
18475--18517	19	2.2	20	83	4	52	67	4	0	27	1.10
18875--18916	7	6.0	7	100	0	84	14	0	0	85	0.59
19737--19780	21	2.1	21	82	0	52	31	25	20	22	1.98
19790--20083	21	14.2	19	70	24	133	21	16	23	38	1.93
19874--20086	42	5.1	42	90	2	329	20	17	23	38	1.93
20954--20995	19	2.2	19	95	0	75	33	28	19	19	1.96
20944--21009	19	3.4	19	79	10	55	34	27	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24114--24154	3	13.7	3	100	0	82	68	0	0	31	0.90
27706--27798	29	3.1	29	67	11	71	35	15	3	46	1.62
28031--28161	60	2.2	60	78	8	140	37	4	26	31	1.77
32828--32894	25	2.7	25	97	0	125	37	10	22	29	1.88
40499--40657	59	2.7	59	77	12	173	32	22	6	38	1.81
40512--40674	59	2.7	60	79	13	156	31	22	6	39	1.78
40875--41000	61	2.1	61	83	8	159	41	5	23	29	1.77
46058--46110	23	2.4	21	81	12	61	28	0	1	69	0.99
47599--47724	50	2.5	49	79	5	135	16	34	27	21	1.95
47846--47886	10	4.1	10	84	12	57	31	29	0	39	1.57
48010--48231	111	2.0	111	96	0	408	35	8	11	45	1.71
50101--50148	6	7.5	6	80	13	51	33	20	33	12	1.90
50108--50153	21	2.2	21	88	0	65	36	19	30	13	1.90
54330--54374	21	2.1	21	91	4	72	48	0	0	51	1.00
57470--57562	21	4.5	21	78	4	100	39	18	24	17	1.91
57470--57562	41	2.3	41	100	0	186	39	18	24	17	1.91
57489--57623	41	3.3	41	82	6	132	38	20	21	19	1.94
57551--57645	20	4.7	20	80	2	91	34	24	17	23	1.96
57833--57876	22	2.0	22	95	0	79	20	45	15	18	1.85
58140--58177	20	1.9	20	88	0	58	13	15	21	50	1.78
60468--60594	33	3.8	33	88	4	202	42	19	22	14	1.88
60469--60595	66	1.9	66	98	0	245	41	20	22	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62088--62154	21	3.2	21	68	4	55	19	20	35	23	1.95
62088--62210	42	2.9	41	80	7	113	22	17	36	22	1.95
64234--64332	33	3.0	33	89	1	144	39	26	23	11	1.88
64209--64393	19	10.1	19	77	14	174	43	22	22	11	1.85
64304--64393	39	2.3	38	94	1	153	46	22	20	11	1.81
64389--64455	19	3.5	19	85	2	89	10	16	25	47	1.78
64974--65025	20	2.6	20	93	0	86	25	19	28	26	1.98
64995--65129	41	3.3	41	83	4	139	20	20	20	38	1.94
65061--65131	21	3.4	21	80	3	99	15	23	18	42	1.88
65075--65148	20	3.7	20	80	3	94	17	22	18	40	1.91
65059--65148	41	2.2	41	100	0	180	17	24	17	40	1.91
67439--67494	24	2.3	24	90	0	85	10	12	26	50	1.73
67449--67490	14	3.3	14	75	25	56	7	14	26	52	1.67
67449--67497	24	2.0	24	100	0	98	8	14	24	53	1.68
67455--67510	24	2.3	24	90	0	85	12	10	19	57	1.64
68414--68470	16	3.7	16	86	4	73	12	10	19	57	1.63
68531--68563	16	2.1	16	100	0	66	6	12	24	57	1.57
69907--70006	39	2.6	39	82	1	121	36	21	27	16	1.94
70419--70443	3	8.3	3	100	0	50	64	0	0	36	0.94
70756--70791	18	2.0	18	100	0	72	22	27	33	16	1.95
70757--70808	18	2.9	18	88	0	68	25	23	28	23	1.99
76744--76839	39	2.5	39	82	0	111	33	20	25	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77252--77276	3	8.3	3	100	0	50	64	0	0	36	0.94
79180--79242	25	2.5	25	100	0	126	39	17	7	34	1.79
79263--79386	63	2.0	63	82	6	153	28	28	25	18	1.98
80262--80395	29	4.6	29	91	0	214	38	22	5	34	1.77
80398--80442	17	2.6	18	86	10	67	8	20	53	17	1.70
87664--87796	29	4.6	29	88	0	203	38	20	5	36	1.75
87664--87796	58	2.3	58	93	0	230	38	20	5	36	1.75
87799--87848	22	2.3	22	89	6	75	10	22	50	18	1.76
89375--89416	2	21.5	2	95	4	77	50	0	0	50	1.00
89970--90072	53	1.9	54	86	3	147	38	20	14	26	1.91
94409--94483	38	2.0	38	83	0	96	56	18	5	20	1.61
98234--98312	22	3.7	21	78	17	90	21	24	30	24	1.99
105284--105320	20	2.0	20	89	10	60	27	27	29	16	1.97
105302--105338	13	2.8	13	91	0	65	21	24	37	16	1.93
116768--117275	251	2.0	257	88	5	773	41	13	1	43	1.53
119274--119458	47	3.8	48	72	15	146	18	22	23	35	1.95
119731--119858	31	4.1	31	83	4	168	33	7	28	30	1.85
120396--120456	23	2.9	22	70	20	58	55	24	0	19	1.43
121540--121569	2	15.0	2	100	0	60	50	0	0	50	1.00
123932--123965	17	2.0	17	94	0	59	38	26	17	17	1.92
125931--126083	60	2.5	60	80	4	166	40	5	23	30	1.78
131553--131626	29	2.6	29	89	2	105	28	28	10	32	1.91

Tables:   1

The End!