Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006444.1 Hibiscus syriacus cultivar Beakdansim tig00015573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110116

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1960--2010
22
2.4
22
96
3
95
13
35
29
21
1.92
2015--2075
30
2.0
31
90
3
97
22
39
14
22
1.91
2451--2988
268
2.0
267
91
1
880
36
14
11
36
1.83
8834--8866
2
17.0
2
93
6
59
48
0
0
51
1.00
11234--11286
15
3.5
15
82
10
63
5
15
54
24
1.62
12042--12103
26
2.3
26
94
5
106
48
0
19
32
1.49
12052--12111
26
2.5
24
86
8
68
50
0
21
28
1.49
12339--12365
2
13.5
2
100
0
54
48
0
0
51
1.00
19836--19866
16
1.9
16
93
0
53
80
0
0
19
0.71
21481--21557
38
2.0
38
87
5
111
27
22
24
25
2.00
24430--24512
31
2.8
31
73
19
86
45
13
6
34
1.68
28815--28854
18
2.2
19
86
4
55
60
0
5
35
1.19
33518--33543
3
8.7
3
100
0
52
0
34
0
65
0.93
35093--35216
31
4.0
31
80
7
117
30
16
20
33
1.94
35203--35275
30
2.4
30
86
0
92
20
21
27
30
1.98
38139--38173
3
11.7
3
93
0
61
2
34
0
62
1.10
38706--38754
22
2.2
22
82
7
64
32
30
28
8
1.86
39722--39845
31
4.0
31
80
7
135
29
18
20
31
1.97
39832--39904
30
2.4
30
86
0
92
20
21
27
30
1.98
46723--46756
2
17.0
2
100
0
68
50
0
0
50
1.00
46721--46762
8
4.7
9
85
14
52
50
0
2
47
1.14
50695--50723
3
9.7
3
100
0
58
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50846--50885
16
2.4
17
83
4
55
12
25
32
30
1.92
51094--51129
16
2.3
15
90
4
54
52
5
0
41
1.24
54141--54214
29
2.5
28
82
10
76
33
16
5
44
1.70
54872--54924
27
2.0
27
92
7
90
43
3
15
37
1.64
55112--55156
21
2.1
21
91
0
72
60
0
2
37
1.09
55107--55187
21
3.9
22
67
23
59
55
0
1
43
1.07
59159--59205
20
2.4
20
96
3
87
17
23
19
40
1.91
62796--62828
16
2.0
17
88
5
50
60
3
3
33
1.27
73126--73173
21
2.3
21
96
0
87
27
18
12
41
1.86
77785--77831
21
2.2
21
96
0
85
29
17
8
44
1.78
89643--89827
60
3.1
60
74
7
155
32
22
5
38
1.79
95608--95694
35
2.5
34
78
12
88
55
10
6
27
1.59
103131--103202
18
3.9
18
72
16
76
31
30
18
19
1.95
103275--103324
21
2.4
21
76
6
57
38
24
12
26
1.90
105931--105982
8
6.1
9
73
13
56
63
1
1
32
1.16
105933--105989
16
3.5
16
88
4
78
63
1
1
33
1.15
106028--106067
10
4.0
10
86
0
53
40
0
32
27
1.57

Tables:   1

The End!