genome.fa.s6445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006445.1 Hibiscus syriacus cultivar Beakdansim tig00015582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62000

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4428--4484	2	30.0	2	89	10	93	50	0	0	49	1.00
6171--6233	32	2.0	31	84	3	81	38	6	14	41	1.71
7306--7947	14	46.8	14	72	12	359	48	4	4	42	1.44
7644--7947	126	2.4	126	91	2	504	48	4	5	41	1.46
7259--7662	78	4.8	84	76	15	350	49	4	3	42	1.41
7259--7662	42	9.6	42	77	10	369	49	4	3	42	1.41
10617--10772	77	2.0	77	98	0	303	44	10	17	27	1.81
15648--15702	21	2.6	21	69	11	58	72	10	5	10	1.26
23225--23673	228	2.0	228	86	3	627	45	6	13	34	1.69
23995--24060	32	2.1	32	94	0	114	43	18	12	25	1.84
24620--24664	23	2.0	23	86	0	63	40	2	4	53	1.33
24621--24671	23	2.2	23	82	0	57	43	1	3	50	1.31
24702--24764	27	2.3	26	79	15	67	49	3	1	46	1.27
24780--24884	31	3.1	33	70	13	81	47	0	0	50	1.14
24859--24907	23	2.1	24	84	3	64	48	0	0	51	1.00
25110--25189	42	1.9	42	89	0	124	57	8	6	27	1.53
28995--29036	12	3.2	13	84	15	52	30	0	0	69	0.89
29125--29168	16	2.7	16	80	16	54	29	0	2	68	1.02
30153--30221	2	34.5	2	100	0	138	49	0	0	50	1.00
32000--32058	24	2.9	19	80	14	57	54	3	0	42	1.17
32247--32294	25	1.9	24	83	8	60	43	4	0	52	1.20
33674--33701	14	2.0	14	100	0	56	42	7	28	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42919--42963	23	2.0	23	81	0	54	53	17	17	11	1.72
43187--43214	2	14.0	2	100	0	56	50	0	0	50	1.00
44203--44247	4	11.2	4	90	0	72	73	0	24	2	0.95
44403--44444	17	2.4	18	84	8	59	19	2	9	69	1.28
46472--46609	64	2.2	65	84	5	174	33	19	23	23	1.97
46884--46918	6	5.7	6	96	3	61	45	17	20	17	1.85
46923--46971	20	2.6	18	81	12	53	24	2	22	51	1.59
47818--47849	2	16.0	2	100	0	64	50	0	0	50	1.00
48241--48308	23	3.0	23	76	8	75	19	22	26	32	1.97
50670--50728	23	2.6	22	80	15	59	55	1	5	37	1.32
51412--51478	23	2.9	23	88	0	98	17	23	23	34	1.96
51508--51541	17	2.1	17	88	5	52	32	23	5	38	1.79
51646--51689	20	2.1	21	91	4	72	15	9	22	52	1.71
51765--51840	2	38.0	2	100	0	152	50	0	0	50	1.00

Tables:   1

The End!