genome.fa.s6446.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006446.1 Hibiscus syriacus cultivar Beakdansim tig00015597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103121

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1253--1318	32	2.1	31	86	8	89	59	7	12	21	1.57
2568--2858	30	9.9	30	68	8	107	59	7	10	22	1.55
4294--4343	3	16.7	3	91	0	82	62	0	2	36	1.07
8130--8222	42	2.2	42	86	1	132	12	22	21	43	1.87
8550--8576	2	13.5	2	100	0	54	51	0	0	48	1.00
9457--10011	144	3.9	144	87	4	752	41	14	30	14	1.85
9457--10007	287	1.9	283	88	4	822	41	14	30	13	1.84
17369--17407	20	2.0	20	84	0	51	30	23	15	30	1.95
23214--23306	31	3.0	31	74	3	80	27	16	17	38	1.91
23307--23361	22	2.6	21	85	5	67	18	23	32	25	1.97
23642--23680	16	2.3	17	82	8	53	53	7	15	23	1.67
23726--23758	2	16.5	2	93	0	57	48	0	3	48	1.17
27294--27354	23	2.7	23	80	10	79	27	27	24	19	1.99
27370--27587	103	2.1	103	95	0	400	38	22	12	26	1.90
29097--29142	21	2.2	21	84	0	56	13	26	30	30	1.93
32318--32378	23	2.7	23	89	0	95	26	27	26	19	1.99
32394--32611	103	2.1	103	96	0	400	36	24	13	25	1.92
34150--34195	21	2.2	21	88	0	65	13	23	30	32	1.93
34911--34947	19	1.9	19	94	0	65	35	13	21	29	1.92
35911--35982	31	2.4	30	79	4	81	27	16	16	38	1.90
35911--35999	30	2.9	30	80	6	90	28	16	17	37	1.92
36148--36194	19	2.5	20	75	6	53	42	0	17	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36450--36833	183	2.1	179	88	4	565	46	9	3	41	1.52
38353--38395	19	2.4	19	84	7	54	16	6	9	67	1.40
42884--42909	2	13.0	2	100	0	52	50	0	0	50	1.00
44490--44644	5	31.0	5	100	0	310	60	0	0	40	0.97
57222--57330	36	3.0	36	82	8	132	50	4	4	40	1.43
57340--57410	34	2.0	33	84	13	88	43	5	7	43	1.55
57550--57594	14	3.1	14	87	3	63	22	2	0	75	0.91
58992--59016	12	2.1	12	100	0	50	40	0	0	60	0.97
60630--60671	19	2.3	19	91	4	68	11	14	9	64	1.50
64025--64769	164	4.6	164	88	3	957	29	24	21	24	1.99
64012--64769	80	9.3	80	78	6	768	29	24	21	24	1.99
64034--64772	246	3.0	243	81	6	880	29	24	21	24	1.99
64717--64826	54	2.0	54	94	0	193	30	22	19	28	1.98
64557--64971	219	1.9	214	88	3	625	28	25	20	25	1.99
64771--65000	84	2.8	81	82	5	266	30	24	20	24	1.98
65572--65679	36	3.0	36	82	10	132	50	4	4	40	1.44
65689--65759	34	2.0	33	84	13	88	43	5	7	43	1.55
65899--65943	14	3.1	14	87	3	63	22	2	0	75	0.91
67869--67901	16	2.1	16	94	5	59	54	0	0	45	0.99
68463--68493	16	1.9	16	100	0	62	32	6	12	48	1.67
68549--68599	19	2.6	19	90	3	84	19	9	3	66	1.36
68558--68593	11	3.5	11	78	21	51	16	11	5	66	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75492--75756	87	3.0	87	86	4	354	44	8	10	35	1.70
78603--78677	38	2.0	37	84	5	98	48	5	1	45	1.33
81206--81455	20	12.4	20	82	4	207	41	20	18	20	1.91
81224--81321	41	2.4	41	84	3	117	40	24	17	17	1.90
81245--81326	21	4.0	21	80	3	103	36	25	18	19	1.94
82320--82373	24	2.2	24	90	0	81	20	16	20	42	1.89
84923--85055	19	7.4	19	72	19	106	43	18	21	15	1.87
84910--85069	33	4.6	33	77	10	185	43	19	23	14	1.87
85015--85071	14	3.7	14	70	20	51	47	21	21	10	1.80
85081--85179	19	5.7	19	70	22	92	12	23	18	46	1.82
85086--85179	33	2.8	33	98	0	179	12	23	18	45	1.83
85110--85161	14	3.4	14	72	23	50	11	25	19	44	1.84
86661--86730	21	3.3	21	70	4	61	20	20	35	24	1.96
86661--86783	42	2.9	41	79	7	122	23	17	35	22	1.95
86974--87335	94	3.9	94	93	1	593	46	19	12	21	1.82
89005--89066	20	3.2	20	79	4	81	46	17	20	14	1.83
89003--89120	33	3.4	33	90	7	164	45	19	22	12	1.84
89003--89120	19	6.7	19	68	20	94	45	19	22	12	1.84
89050--89106	14	3.7	14	70	20	51	43	22	22	10	1.84
89032--89120	33	2.7	33	98	0	169	44	21	21	12	1.84
89155--89226	20	3.6	19	84	5	90	12	16	19	51	1.76
89785--89996	20	10.4	20	78	8	205	18	17	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89785--90037	41	6.2	41	84	5	320	18	18	24	38	1.93
89803--90037	20	11.6	20	74	11	147	18	18	24	38	1.93
90087--90140	20	2.7	19	75	8	63	16	18	31	33	1.93
90128--90180	19	2.8	19	97	0	97	13	16	18	50	1.77
90568--90601	18	2.0	16	88	11	50	64	0	2	32	1.08
95144--95190	22	2.1	23	84	7	62	44	6	6	42	1.55
95595--95628	2	17.0	2	100	0	68	50	0	0	50	1.00
95703--95819	59	1.9	60	87	5	173	42	17	22	17	1.89
96653--96685	12	2.7	13	86	13	52	45	39	6	9	1.61
99234--99289	23	2.5	23	85	2	69	30	25	25	19	1.98

Tables:   1

The End!