genome.fa.s6447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006447.1 Hibiscus syriacus cultivar Beakdansim tig00015607_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56491

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6109--6145	19	1.9	19	94	0	65	29	29	13	27	1.94
6230--6356	67	1.9	67	96	0	236	29	25	17	28	1.97
11491--11569	32	2.7	28	73	21	79	16	5	26	51	1.65
11424--11682	124	2.1	124	81	13	302	24	6	24	44	1.78
11623--11689	28	2.4	28	79	0	89	16	5	31	46	1.71
12207--12255	16	2.9	17	81	6	55	32	24	4	38	1.74
15070--15445	54	7.0	54	92	1	594	32	11	17	38	1.86
15088--15491	54	7.5	54	91	0	295	33	11	16	37	1.85
17995--18042	23	2.1	23	88	7	71	39	12	14	33	1.84
20208--20251	18	2.4	18	92	0	70	20	50	18	11	1.77
20268--20378	29	3.8	29	91	0	177	21	9	22	46	1.79
20301--20402	29	3.5	29	87	0	87	25	8	21	44	1.81
20273--20402	58	2.2	58	86	0	170	25	8	20	45	1.79
28144--28177	3	11.3	3	100	0	68	67	0	0	32	0.91
28495--28827	116	2.9	116	84	4	361	28	23	14	34	1.93
29062--29207	44	3.3	44	73	8	125	32	15	15	36	1.88
29025--29207	90	2.1	89	81	3	208	33	14	15	36	1.88
30786--30831	24	1.9	24	86	0	65	52	15	8	23	1.70
30821--30854	12	2.8	12	90	0	50	50	20	17	11	1.77
37238--37285	24	2.0	24	95	0	87	31	8	18	41	1.80
40134--40217	41	2.0	41	93	0	141	20	16	15	47	1.82
40459--40507	22	2.2	22	88	0	71	51	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40450--40509	30	1.9	32	86	6	88	50	0	1	48	1.11
40492--40550	23	2.6	23	83	5	75	54	1	1	42	1.20
40536--40638	28	3.5	31	76	12	101	46	0	0	51	1.14
40568--40638	19	3.7	18	72	10	52	49	1	1	47	1.18
40604--40683	35	2.3	35	77	14	87	53	2	0	43	1.14
40605--40677	23	3.1	23	82	5	76	52	2	0	45	1.15
40646--40816	90	1.9	88	81	11	204	50	5	0	44	1.24
41009--41074	15	4.5	15	80	1	71	34	19	4	40	1.72
41009--41074	30	2.2	30	91	2	107	34	19	4	40	1.72
41018--41082	15	4.4	15	86	1	96	35	20	6	38	1.77
44008--44051	21	2.0	22	86	4	63	45	0	31	22	1.53
44958--45105	64	2.3	64	89	4	219	28	20	18	31	1.97
47051--47090	21	1.9	21	90	10	64	57	7	5	30	1.48
55376--55422	15	3.0	15	77	17	51	63	2	4	29	1.25

Tables:   1

The End!