Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006448.1 Hibiscus syriacus cultivar Beakdansim tig00015613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90643

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9969--10009
2
20.5
2
100
0
82
51
0
0
48
1.00
11832--11891
30
2.0
30
83
6
77
33
18
6
41
1.76
14769--14883
24
4.8
24
86
4
133
41
20
13
24
1.88
22514--22557
9
4.9
9
77
0
52
40
20
11
27
1.86
26181--26220
10
4.1
10
93
3
64
45
0
12
42
1.42
26605--26665
20
2.9
21
87
7
79
18
26
34
21
1.96
30465--30517
21
2.5
20
82
11
54
35
9
1
52
1.45
33711--33761
21
2.4
21
96
0
93
43
17
0
39
1.49
34321--34375
22
2.5
22
93
0
92
25
21
23
29
1.99
38614--38657
12
3.5
12
76
11
52
6
9
13
70
1.33
38600--38660
26
2.3
26
94
0
104
8
8
11
72
1.29
38909--38981
3
25.7
3
86
13
102
31
0
0
68
0.90
40390--40424
16
2.1
17
89
5
54
31
5
2
60
1.35
40451--40533
24
3.3
26
79
15
70
26
1
3
68
1.13
40452--40531
11
7.0
11
77
16
83
25
1
3
70
1.12
42794--42871
37
2.1
38
85
2
104
29
15
23
32
1.95
48721--48860
75
1.9
75
92
0
235
30
19
21
28
1.97
50159--50237
22
3.6
22
91
0
104
34
15
11
39
1.83
50605--50882
113
2.4
114
88
4
400
39
14
17
28
1.89
50862--51108
122
2.0
123
84
3
320
40
13
19
26
1.89
51344--51419
3
26.7
3
82
12
90
34
0
0
65
0.93
52895--52959
25
2.6
24
74
13
69
26
1
3
69
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52971--53011
2
20.5
2
100
0
82
48
0
0
51
1.00
54017--54057
18
2.2
19
86
4
57
36
0
12
51
1.40
58041--58132
3
29.7
3
89
6
123
38
0
0
61
0.96
59457--59485
3
9.7
3
100
0
58
31
0
0
68
0.89
59665--59706
20
2.2
19
86
4
57
33
0
2
64
1.07
59563--59798
121
2.0
118
81
5
280
37
7
7
47
1.60
63594--63625
15
2.1
15
94
0
55
25
18
9
46
1.79
70966--71028
3
23.3
3
76
15
50
76
0
23
0
0.79
70964--71034
33
2.1
33
92
7
117
77
0
22
0
0.77
70952--71033
16
5.0
16
84
8
103
75
0
23
1
0.87
72662--73650
225
4.3
226
85
7
1308
38
13
18
29
1.89
73206--73924
124
5.9
123
81
9
811
40
14
17
26
1.88
74124--74188
3
21.7
3
81
12
80
35
0
0
64
0.94
74124--74176
24
2.2
24
96
0
97
32
0
0
67
0.91
75507--75538
3
10.7
3
93
0
55
31
3
0
65
1.08
76461--76500
21
2.0
21
85
5
55
70
7
10
12
1.35
76869--76940
20
3.6
20
83
14
103
34
19
22
23
1.96
77481--77528
19
2.5
20
75
3
53
43
27
18
10
1.82
77524--77583
19
3.1
19
83
4
84
13
21
20
45
1.85
77524--77582
20
3.0
20
85
2
84
13
20
20
45
1.84
78562--78586
12
2.1
12
100
0
50
0
28
0
72
0.86
78761--78814
24
2.2
24
86
0
72
40
18
16
24
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79540--79627
20
4.4
20
91
0
131
26
19
30
23
1.98
80198--80256
29
2.0
29
86
0
82
40
8
0
50
1.33
83307--83385
29
2.7
30
82
7
101
41
7
0
50
1.31
83428--83518
27
3.3
28
75
6
78
48
0
6
45
1.28
87886--87931
12
3.5
14
77
14
53
56
4
4
34
1.39

Tables:   1

The End!