genome.fa.s6449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006449.1 Hibiscus syriacus cultivar Beakdansim tig00015622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60754

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5137--5329	40	4.8	40	81	9	207	40	23	15	20	1.90
5117--5307	20	9.6	20	73	13	135	41	24	14	19	1.89
5137--5317	80	2.2	80	93	0	299	40	22	15	20	1.90
5296--5387	19	4.7	19	82	8	96	34	21	13	30	1.91
5137--5370	80	2.9	80	87	2	274	39	23	14	22	1.91
5256--5387	40	3.3	40	76	9	117	37	22	13	26	1.92
5312--5406	19	5.0	18	80	11	66	33	20	13	32	1.91
5542--5581	16	2.5	16	83	0	53	27	5	0	67	1.11
6333--6386	24	2.2	24	90	0	81	22	18	18	40	1.91
8649--8684	18	2.0	18	88	0	54	55	22	2	19	1.56
9006--9052	20	2.3	20	74	0	58	25	23	21	29	1.99
9063--9122	20	2.9	21	76	18	63	20	16	21	41	1.90
9593--9629	18	2.1	18	89	0	56	32	5	10	51	1.60
9585--9637	24	2.2	24	86	0	70	35	3	13	47	1.61
11043--11186	66	2.2	64	92	2	234	49	18	2	30	1.59
12563--12619	21	2.7	21	75	0	60	22	22	31	22	1.98
13343--13372	15	2.0	15	93	0	51	30	30	20	20	1.97
14802--14878	20	4.2	20	78	20	96	46	23	19	10	1.80
14802--14868	34	2.0	34	96	0	125	47	22	20	8	1.78
14817--14850	14	2.4	14	95	0	59	50	20	20	8	1.75
14891--14930	20	2.0	20	85	0	53	15	12	22	50	1.77
15102--15137	17	2.1	17	100	0	72	41	11	11	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15419--15540	20	6.1	20	71	15	83	18	13	22	44	1.86
15486--15571	40	2.2	40	89	0	127	23	13	22	40	1.89
15505--15591	20	4.3	20	72	16	81	22	16	22	37	1.93
17065--17121	20	2.8	20	94	0	96	28	28	15	28	1.96
20193--20237	23	2.0	23	90	0	72	24	26	26	22	2.00
20213--20519	149	2.1	149	95	0	551	35	21	15	27	1.94
20620--20647	14	2.0	14	100	0	56	35	28	7	28	1.84
21921--21965	21	2.1	21	87	0	63	15	24	28	31	1.96
26409--26471	22	2.9	22	87	0	99	25	31	26	15	1.96
27002--27079	20	3.9	20	86	0	111	30	23	14	32	1.94
27002--27080	40	2.0	40	94	0	140	31	22	13	31	1.93
28642--28670	14	2.0	15	93	6	51	58	27	0	13	1.36
28751--28837	17	5.2	17	62	25	51	29	27	18	24	1.98
28737--28837	33	3.1	33	92	0	175	30	25	17	25	1.97
31729--31773	23	2.0	21	87	8	63	0	46	0	53	1.00
31728--31772	13	3.4	14	79	14	51	0	44	0	55	0.99
32792--32832	21	2.0	21	85	0	55	51	9	9	29	1.67
37809--37848	19	2.2	19	86	4	55	47	0	0	52	1.00
45693--45718	3	8.7	3	100	0	52	30	0	0	69	0.89
46141--46170	15	1.9	16	93	6	53	23	6	10	60	1.52
46341--46370	15	1.9	16	93	6	53	33	20	13	33	1.91
46885--46963	33	2.4	33	82	2	97	13	10	27	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47089--47131	14	3.2	14	80	6	54	11	11	44	32	1.77
51159--51640	225	2.1	227	94	2	846	45	8	7	39	1.62
51919--51965	20	2.4	19	86	10	67	55	8	17	19	1.67
51708--52179	181	2.6	181	88	1	669	42	14	16	26	1.87
52100--52146	20	2.4	19	82	10	67	53	10	17	19	1.72
52109--52151	20	2.3	19	88	11	63	51	11	16	20	1.75
54371--54411	21	2.0	21	85	0	55	36	14	31	17	1.90
54461--54526	33	2.0	33	87	0	96	28	0	46	24	1.52
55561--56506	195	4.9	197	91	6	1478	36	15	16	30	1.90
55561--56506	196	4.9	198	91	5	1507	36	15	16	30	1.90
56352--56402	17	3.1	17	85	2	59	49	19	13	17	1.80
55561--56506	389	2.5	385	90	6	1501	36	15	16	30	1.90
57945--58039	18	5.4	18	75	7	88	36	7	34	21	1.81
57945--58039	6	15.3	6	76	6	64	36	7	34	21	1.81
57960--58043	3	28.0	3	76	0	78	35	5	34	23	1.80
57948--58039	36	2.6	36	84	5	118	35	7	34	21	1.82
57948--58039	12	7.9	12	81	7	91	35	7	34	21	1.82
59504--59976	176	2.7	175	89	6	717	34	14	17	33	1.90

Tables:   1

The End!