Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000645.1 Hibiscus syriacus cultivar Beakdansim tig00001250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82290

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--545
20
2.0
20
95
0
71
32
20
30
17
1.95
515--660
20
7.2
20
87
4
186
25
18
25
30
1.98
731--771
21
2.0
21
85
0
55
34
31
17
17
1.93
4707--4762
24
2.3
24
90
0
85
37
17
17
26
1.93
9623--9750
31
4.1
31
80
9
152
26
18
21
33
1.96
12177--12356
91
2.0
91
91
4
292
21
23
15
40
1.91
20672--20741
30
2.3
30
100
0
140
38
15
18
27
1.91
28846--28876
16
1.9
16
100
0
62
58
22
12
6
1.58
28968--29031
10
6.1
10
78
10
65
64
14
9
12
1.50
28958--29032
23
3.4
22
80
12
91
64
14
9
12
1.50
28978--29047
33
2.2
32
82
5
88
67
17
7
8
1.40
28990--29039
23
2.2
23
85
7
66
62
22
8
8
1.49
29295--29321
14
1.9
14
100
0
54
59
14
11
14
1.62
29295--29358
24
2.6
24
82
5
74
56
10
12
20
1.66
39891--39968
29
2.7
29
80
7
88
30
15
15
38
1.88
40282--40401
61
2.0
61
85
6
163
42
11
13
32
1.80
48378--48438
22
2.8
22
89
0
86
4
44
19
31
1.72
48493--48532
21
1.9
21
90
10
64
47
2
2
47
1.29
49567--49634
34
2.0
34
85
0
91
42
14
10
32
1.80
50303--50409
2
57.0
2
72
12
75
51
0
0
48
1.00
50427--50461
12
2.9
12
95
0
61
28
51
11
8
1.67
60546--60570
12
2.1
12
100
0
50
48
8
8
36
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60785--60822
15
2.6
15
87
4
51
65
0
2
31
1.06
61103--61207
42
2.5
41
80
13
117
36
6
20
36
1.79
63746--63965
75
2.9
75
81
6
219
35
24
20
18
1.95
63761--64008
81
3.1
81
80
8
246
36
24
20
17
1.94
64896--64983
42
2.1
42
86
0
122
45
25
4
25
1.72
66344--66375
2
16.0
2
100
0
64
50
0
0
50
1.00
73784--73815
17
1.9
16
93
6
55
65
3
6
25
1.31
80119--80243
65
1.9
64
95
1
223
39
9
4
46
1.58
81257--81294
20
1.9
20
89
10
60
23
7
2
65
1.32
81257--81300
20
2.2
20
84
8
54
20
6
6
65
1.39
81417--81463
25
1.9
24
82
4
58
46
2
0
51
1.13

Tables:   1

The End!