Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006452.1 Hibiscus syriacus cultivar Beakdansim tig00015629_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61530

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1145--1381
35
6.7
34
79
14
214
47
1
6
44
1.39
1303--1362
12
5.0
12
72
12
52
43
1
8
46
1.43
14003--14274
36
7.6
36
86
6
365
44
4
7
43
1.53
14003--14274
35
7.7
35
86
6
343
44
4
7
43
1.53
14003--14274
71
3.8
71
85
7
372
44
4
7
43
1.53
14320--14377
11
5.2
11
77
4
62
25
1
0
72
0.94
14321--14376
4
13.8
4
78
17
62
26
1
0
71
0.96
21212--21337
47
2.8
45
85
5
164
29
23
7
39
1.83
21440--21561
40
3.0
40
95
0
217
33
25
16
24
1.96
25423--25478
2
26.5
2
89
10
85
46
0
5
48
1.25
26614--26652
14
2.9
14
84
3
53
53
0
12
33
1.39
27105--27159
22
2.5
22
100
0
110
10
14
30
43
1.80
28707--28826
35
3.3
36
88
5
172
45
20
5
30
1.72
33345--33453
35
3.0
36
90
5
166
44
18
5
31
1.72
33385--33445
21
3.2
21
63
29
55
42
19
4
32
1.73
33352--33480
35
3.6
36
83
9
133
41
17
6
33
1.77
36518--36547
15
1.9
15
93
6
51
6
30
20
43
1.77
37740--37853
35
3.2
37
85
7
155
43
19
2
34
1.65
40769--40795
3
9.0
3
100
0
54
33
0
0
66
0.92
41825--41867
10
4.2
10
85
5
59
74
0
25
0
0.82
41824--41860
11
3.5
11
79
20
51
75
0
24
0
0.80
41938--41989
3
17.3
3
100
0
104
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42113--42142
3
10.0
3
100
0
60
33
0
0
66
0.92
42332--42372
3
13.7
3
100
0
82
31
0
0
68
0.90
42625--42715
46
2.0
46
97
2
175
15
4
8
71
1.27
49311--49384
30
2.4
32
82
13
93
55
9
8
27
1.60
53855--53953
20
4.9
20
88
4
146
11
16
21
51
1.74
53854--53964
20
5.6
20
80
10
120
13
15
19
51
1.76
56006--56066
21
2.9
21
83
11
72
21
36
21
21
1.96
56031--56080
21
2.4
21
83
12
75
26
36
18
20
1.95
57584--57636
20
2.7
20
96
0
97
43
22
15
18
1.87
57540--57722
74
2.5
74
83
0
240
32
18
19
29
1.96
57725--57801
20
3.8
20
79
6
84
20
15
16
46
1.84
58055--58090
18
2.0
18
94
0
63
16
2
25
55
1.55
61172--61355
27
6.7
27
76
8
131
33
6
17
42
1.75
61172--61326
27
5.7
28
78
10
151
33
7
18
41
1.77

Tables:   1

The End!