Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006454.1 Hibiscus syriacus cultivar Beakdansim tig00015635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78992

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1988--2080
31
2.9
32
82
7
102
35
20
17
26
1.94
2617--2658
18
2.3
18
80
8
50
42
26
2
28
1.67
10143--10171
15
1.9
15
100
0
58
44
0
0
55
0.99
10602--10667
30
2.2
30
81
7
80
31
10
16
40
1.83
10628--10699
30
2.4
29
84
11
92
34
12
12
40
1.81
11054--11119
30
2.2
29
89
2
96
43
9
19
27
1.81
16140--16206
30
2.2
30
83
0
80
43
8
14
32
1.77
17312--17409
19
5.2
19
79
8
101
43
6
19
30
1.75
17313--17409
38
2.6
38
82
9
117
44
6
19
29
1.75
19253--19549
129
2.3
129
94
0
504
40
10
14
35
1.80
20758--20816
21
2.8
21
94
0
100
52
20
6
20
1.69
32548--32610
28
2.2
28
83
5
74
63
4
1
30
1.24
33394--33460
30
2.2
30
91
0
107
46
10
17
25
1.80
38163--38229
30
2.2
30
86
0
89
44
7
13
34
1.72
38163--38229
15
4.5
15
75
0
71
44
7
13
34
1.72
39092--39184
31
2.9
32
82
7
102
35
20
17
26
1.94
39723--39764
18
2.3
18
80
8
50
42
26
2
28
1.67
47264--47292
15
1.9
15
100
0
58
44
0
0
55
0.99
47720--47785
30
2.2
30
81
7
80
31
10
16
40
1.83
47746--47817
30
2.4
29
84
11
92
34
12
12
40
1.81
48172--48238
30
2.2
30
91
0
107
43
10
19
26
1.83
53260--53326
30
2.2
30
83
0
80
43
8
14
32
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54432--54529
19
5.2
19
79
8
101
43
6
19
30
1.75
54433--54529
38
2.6
38
82
9
117
44
6
19
29
1.75
56374--56670
129
2.3
129
94
0
504
40
10
14
35
1.80
56878--56919
20
2.0
21
86
4
59
66
7
0
26
1.17
57880--57938
21
2.8
21
94
0
100
52
20
6
20
1.69
69668--69730
28
2.2
28
83
5
74
63
4
1
30
1.24
70514--70580
30
2.2
30
91
0
107
46
10
17
25
1.80
75269--75333
15
4.4
15
74
1
60
46
7
13
32
1.72
76186--76278
31
2.9
32
82
7
102
35
20
17
26
1.94

Tables:   1

The End!