Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006455.1 Hibiscus syriacus cultivar Beakdansim tig00015637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107365

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6723--6800
40
2.0
40
89
0
120
23
32
16
28
1.96
6873--7060
60
3.2
60
80
8
215
32
22
3
40
1.72
9319--9375
29
2.0
29
96
0
105
15
35
29
19
1.93
9413--9510
50
2.0
49
93
2
169
24
38
21
15
1.92
9513--9606
33
2.8
33
87
3
118
9
37
26
26
1.87
9525--9647
10
11.7
10
71
10
75
11
33
29
26
1.91
9560--9665
20
4.9
20
76
16
88
12
30
32
25
1.92
9584--9647
30
2.1
30
88
5
94
10
28
34
26
1.90
9704--9761
29
2.0
29
86
0
80
22
27
34
15
1.94
11082--11635
228
2.4
226
77
5
578
22
24
23
29
1.99
11607--11674
34
2.0
34
97
0
127
11
27
20
39
1.88
18128--18207
39
2.1
39
92
0
133
32
10
6
51
1.60
25495--25625
65
2.0
64
95
1
235
38
3
19
38
1.70
31143--31170
2
14.0
2
100
0
56
50
0
0
50
1.00
33533--33607
30
2.4
33
89
10
122
46
21
0
32
1.51
40451--40570
59
2.1
58
96
1
222
52
4
5
38
1.43
47039--47074
10
3.6
10
88
0
54
5
13
22
58
1.56
47814--47885
36
2.0
36
88
0
108
36
13
33
16
1.89
47933--48037
34
3.0
34
80
14
92
52
0
0
47
1.00
47954--48037
40
2.2
38
91
4
132
50
0
0
50
1.00
51711--51774
30
2.1
30
85
5
85
23
6
0
70
1.10
53616--53666
2
25.5
2
100
0
102
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53803--53856
22
2.3
24
84
9
67
24
3
3
68
1.22
58297--58350
22
2.5
21
80
11
56
42
29
5
22
1.76
63045--63105
20
3.2
19
77
11
63
52
1
1
44
1.20
76962--77022
31
2.0
31
86
0
86
22
14
13
49
1.78
80831--80866
2
18.0
2
100
0
72
50
0
0
50
1.00
85777--85924
71
2.1
71
80
8
158
33
15
17
33
1.92
87354--87429
24
3.2
24
85
5
75
35
0
6
57
1.25
87350--87404
28
2.0
28
85
7
76
38
0
3
58
1.16
87365--87429
13
5.6
12
72
22
50
33
0
7
58
1.27
87362--87429
23
2.8
24
86
4
84
33
0
7
58
1.26
89802--89830
2
14.5
2
100
0
58
48
0
0
51
1.00
91225--91297
36
1.9
38
83
8
96
50
1
4
43
1.29
91443--91480
20
1.9
20
88
0
58
21
26
10
42
1.85
93980--94142
21
7.9
21
79
9
124
24
25
20
29
1.99
93941--94110
82
2.1
81
92
1
277
25
24
21
28
1.99
94060--94149
21
4.4
21
91
2
139
25
26
18
28
1.98
94598--94649
16
3.1
17
78
13
63
36
0
3
59
1.16
94802--94951
21
7.2
21
88
2
214
31
17
24
26
1.97
94802--94951
62
2.4
61
87
4
210
31
17
24
26
1.97
94942--95009
21
3.3
21
81
4
86
29
20
22
27
1.98
95051--95096
19
2.4
19
85
3
56
21
17
30
30
1.96
95062--95098
19
1.9
19
94
0
65
21
16
29
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101718--101793
38
2.0
38
94
0
134
28
10
26
34
1.90
101998--102049
24
2.1
26
89
7
81
15
13
17
53
1.72
102318--102342
12
2.1
12
100
0
50
8
8
24
60
1.52

Tables:   1

The End!