genome.fa.s6456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006456.1 Hibiscus syriacus cultivar Beakdansim tig00015645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58623

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2568--2624	2	28.5	2	96	0	105	47	0	0	52	1.00
7930--8238	156	2.0	156	94	0	537	29	24	13	33	1.93
14479--14516	13	3.0	13	80	3	51	42	0	0	57	0.98
17465--17547	25	3.6	25	68	25	83	71	8	2	18	1.23
19198--19234	19	2.1	19	85	10	51	64	5	2	27	1.28
19808--19898	44	2.1	44	100	0	182	49	4	13	32	1.61
22669--22782	59	1.9	59	82	3	140	40	20	0	38	1.58
25898--25933	17	2.2	17	90	9	58	69	16	5	8	1.33
25983--26115	65	2.1	64	94	1	230	54	16	12	17	1.71
29833--29944	35	3.2	35	86	5	147	41	20	0	36	1.59
30953--31065	35	3.2	34	88	5	163	33	0	23	42	1.60
31428--31496	22	3.4	19	70	24	50	44	0	4	50	1.21
32748--32902	76	2.0	78	84	5	206	40	9	14	36	1.77
36847--36943	14	7.4	14	70	19	84	44	1	13	41	1.50
36844--36921	17	4.4	17	74	24	72	44	1	12	41	1.51
36878--36943	23	2.9	23	97	0	123	43	0	13	42	1.44
36995--37048	23	2.3	23	100	0	108	38	22	25	12	1.90
38055--38095	20	2.1	19	90	4	64	51	12	0	36	1.40
40279--40337	16	3.9	16	74	17	72	23	35	0	40	1.55
40272--40328	28	2.0	28	96	0	105	24	35	0	40	1.56
42563--42612	20	2.5	20	93	6	84	18	26	36	20	1.95
48695--48719	13	1.9	13	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49264--49322	27	2.1	28	96	3	111	30	16	10	42	1.82
57172--57196	12	2.1	12	100	0	50	0	40	24	36	1.55

Tables:   1

The End!