Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006457.1 Hibiscus syriacus cultivar Beakdansim tig00015651_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91360

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7563--7591
15
1.9
15
100
0
58
10
13
0
75
1.04
7564--7617
12
4.2
12
78
7
54
12
9
1
75
1.11
14253--14300
15
3.1
14
83
16
60
60
0
22
16
1.36
14249--14302
26
2.1
24
83
16
65
61
0
20
18
1.35
14805--14847
20
2.2
20
95
4
79
46
4
11
37
1.61
17074--17124
21
2.4
21
78
12
59
15
13
9
60
1.58
18943--18994
19
2.6
20
90
6
79
44
5
13
36
1.68
32990--33028
17
2.4
17
91
4
62
43
2
5
48
1.38
37073--37327
133
2.0
124
86
6
348
13
16
22
46
1.83
39894--39968
29
2.6
29
100
0
150
20
22
21
36
1.96
41347--41383
4
9.2
4
100
0
74
75
0
0
24
0.80
41737--41769
12
2.6
13
90
4
50
51
0
0
48
1.00
44943--45031
40
2.2
41
78
13
96
25
28
17
28
1.98
45006--45061
21
2.7
21
94
0
94
19
25
16
39
1.91
45006--45086
21
4.0
20
83
4
90
20
23
17
38
1.93
45596--45674
20
3.9
21
86
5
94
51
17
18
11
1.75
45651--45731
33
2.5
33
91
0
126
46
22
19
11
1.81
45659--45715
14
3.7
14
72
20
51
43
22
21
12
1.85
45727--45839
20
6.1
19
76
13
119
10
24
19
45
1.82
45727--45808
19
4.5
19
76
16
66
10
24
23
41
1.86
45732--45839
33
2.9
39
84
9
120
10
24
19
46
1.80
47528--47903
94
4.1
93
95
2
625
21
12
18
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47996--48057
20
3.2
20
76
4
81
50
14
22
12
1.77
48039--48078
14
2.9
14
88
0
62
47
25
20
7
1.75
48067--48124
20
2.9
20
100
0
116
50
29
15
5
1.66
48130--48288
19
8.8
19
77
14
158
10
22
22
45
1.81
48154--48208
14
3.6
14
73
21
56
9
23
21
45
1.80
48133--48264
33
3.8
33
89
6
192
9
22
22
45
1.80
48719--48807
42
2.1
42
81
8
101
24
34
19
21
1.96
48747--48807
21
3.0
20
69
7
50
24
36
18
21
1.95
50150--50185
14
2.6
14
95
0
63
33
0
22
44
1.53
50300--50371
33
2.2
33
92
0
117
51
19
19
9
1.74
50381--50507
33
3.8
33
92
0
200
13
22
17
46
1.83
50416--50527
19
6.4
19
66
20
73
14
21
18
45
1.85
50491--50573
20
4.2
20
72
15
64
24
18
22
34
1.96
53042--53095
24
2.2
24
93
0
90
40
20
18
20
1.91
53042--53109
24
2.8
24
84
0
64
38
20
17
23
1.93
53971--54047
21
3.7
21
96
0
136
38
15
25
19
1.91
76921--76975
25
2.2
25
100
0
110
32
7
0
60
1.24
76921--77005
25
3.4
25
82
12
93
36
4
1
57
1.27
90682--90722
20
2.0
20
100
0
82
41
29
9
19
1.83

Tables:   1

The End!