genome.fa.s6458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006458.1 Hibiscus syriacus cultivar Beakdansim tig00015653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70878

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2868--2960	48	1.9	48	80	8	109	65	6	5	22	1.37
3068--3113	9	5.1	9	86	0	56	6	32	23	36	1.81
5220--5258	20	2.0	19	90	5	60	43	0	23	33	1.54
5370--5496	51	2.5	50	82	3	130	18	28	33	19	1.95
8020--8093	32	2.4	31	82	6	96	35	33	20	10	1.87
9116--9359	29	8.4	29	82	4	278	45	18	4	31	1.70
9315--9464	59	2.5	59	81	8	137	43	18	4	34	1.70
9331--9464	59	2.3	59	88	5	191	44	16	3	35	1.66
10048--10100	21	2.5	21	81	6	72	20	24	18	35	1.95
10090--10141	21	2.5	21	87	3	70	38	17	23	21	1.93
10130--10264	20	6.7	20	82	5	137	33	26	17	22	1.96
10451--10494	22	2.0	22	86	0	61	22	45	15	15	1.85
10758--10815	20	2.9	20	86	0	80	15	15	20	48	1.81
12132--12179	18	2.7	18	93	0	87	27	45	12	14	1.81
12720--12786	20	3.4	20	81	2	73	38	23	22	14	1.92
12834--12892	14	3.9	14	74	20	55	10	15	23	50	1.74
12829--12908	33	2.4	33	95	0	142	11	17	22	48	1.78
12850--12908	19	3.4	19	68	22	65	13	16	20	49	1.80
12893--12947	20	2.8	19	86	8	74	16	25	23	34	1.95
13315--13375	21	3.0	20	73	7	68	22	42	13	21	1.87
13312--13402	41	2.2	42	86	2	130	20	41	16	20	1.90
14809--14847	14	2.8	14	84	0	51	35	0	17	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14987--15089	19	5.7	19	85	8	144	48	18	19	13	1.81
15108--15203	20	4.8	20	97	0	174	14	22	23	38	1.92
15754--15858	20	5.2	20	89	0	147	26	18	28	26	1.98
15729--15906	40	4.4	41	75	5	128	23	17	24	34	1.96
15829--15924	41	2.3	41	82	3	104	20	18	22	37	1.94
15892--15943	20	2.5	21	87	3	70	21	23	17	38	1.93
15933--15985	21	2.5	22	81	6	74	33	18	26	20	1.96
17476--18222	165	4.5	164	81	5	699	26	19	22	31	1.98
17849--18321	245	1.9	245	87	0	696	26	19	23	30	1.98
17585--18308	329	2.2	327	80	6	764	26	18	23	31	1.97
19227--19278	19	2.7	19	100	0	104	21	17	30	30	1.96
19134--19242	57	1.9	56	83	5	139	29	19	22	29	1.98
19809--19873	2	32.5	2	100	0	130	50	0	0	49	1.00
22036--22115	22	3.6	22	77	5	81	26	25	23	25	2.00
22012--22134	43	2.9	42	75	15	117	26	22	25	26	2.00
22068--22134	22	3.2	19	76	17	62	23	20	25	29	1.99
22044--22134	21	4.2	21	76	13	71	25	21	25	27	2.00
22044--22134	42	2.1	44	84	11	118	25	21	25	27	2.00
26348--26388	21	2.0	21	90	0	64	26	29	19	24	1.98
26373--26427	20	2.8	20	91	0	83	36	21	23	18	1.95
26605--26662	30	2.0	29	86	10	82	44	15	5	34	1.69
26605--26663	29	2.0	30	90	6	93	44	15	5	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26697--26899	84	2.4	84	84	0	271	25	18	23	32	1.97
28075--28272	95	2.1	94	87	5	292	32	17	17	32	1.93
30658--30711	24	2.2	24	96	0	99	22	12	27	37	1.91
31141--31275	64	2.1	64	98	0	261	21	11	11	56	1.65
31655--31715	18	3.4	18	100	0	122	49	4	4	40	1.46
42572--42614	20	2.2	20	86	0	59	30	13	20	34	1.92
52648--52701	27	2.0	27	100	0	108	25	7	22	44	1.79
53799--53852	21	2.6	21	96	0	99	31	20	24	24	1.98
56783--60757	221	18.0	221	97	0	7450	38	20	13	26	1.91
61457--61543	19	4.7	18	81	8	77	34	11	12	41	1.79
61454--61543	18	4.9	18	84	8	101	33	11	12	43	1.77
61454--61543	37	2.4	37	83	7	103	33	11	12	43	1.77
61576--61618	18	2.4	18	88	0	59	30	9	9	51	1.65
63954--63998	2	22.5	2	100	0	90	51	0	0	48	1.00

Tables:   1

The End!