genome.fa.s6459.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006459.1 Hibiscus syriacus cultivar Beakdansim tig00015654_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125079

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358--1445	42	2.1	41	83	8	108	37	35	12	14	1.84
7016--7177	83	2.0	83	86	0	225	29	22	14	33	1.93
7637--7666	15	2.0	15	93	0	51	80	0	3	16	0.85
7714--7765	26	1.9	26	84	7	68	46	7	1	44	1.43
7754--8021	36	7.4	35	84	8	240	45	5	2	46	1.40
7742--8021	72	3.8	72	84	8	322	45	6	2	46	1.41
14254--14318	31	2.1	31	88	0	94	49	12	16	21	1.79
15152--15178	7	3.9	7	100	0	54	70	0	0	29	0.88
17893--17928	17	2.1	17	100	0	72	16	47	5	30	1.70
19028--19098	30	2.3	31	79	15	85	26	5	9	57	1.53
22555--22614	28	2.2	27	90	3	93	43	0	30	26	1.55
28481--28561	21	3.8	22	80	7	87	23	35	24	16	1.94
32003--32121	35	3.3	36	90	5	188	31	5	20	43	1.73
36633--36693	21	3.2	21	65	29	64	31	4	21	42	1.74
36625--36743	35	3.3	37	88	8	174	31	5	19	43	1.72
45980--46053	11	5.8	12	76	20	62	68	6	1	22	1.20
45979--46062	40	2.2	38	93	4	141	65	9	1	23	1.29
47646--47691	18	2.6	18	89	3	67	28	21	19	30	1.98
55750--55936	64	2.9	64	80	4	164	31	22	16	29	1.96
55778--55937	64	2.5	64	85	2	205	30	23	16	29	1.96
55778--55957	64	2.8	63	80	9	202	29	24	16	29	1.97
61445--61569	31	4.0	31	94	2	216	39	24	18	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65815--65939	31	4.0	31	91	2	198	38	23	19	19	1.93
69454--69500	21	2.3	20	82	13	60	70	0	10	19	1.16
77774--77807	16	2.1	17	88	5	52	35	0	0	64	0.94
77865--77905	21	2.0	21	85	4	57	60	2	7	29	1.36
79472--79544	3	25.0	3	78	15	55	61	0	0	38	0.96
79474--79555	18	4.4	19	82	10	73	63	0	0	36	0.95
80655--80719	2	31.5	2	83	11	78	49	3	4	43	1.39
86600--86626	12	2.2	12	100	0	54	77	0	14	7	0.97
87087--87315	20	11.4	20	80	5	221	37	25	17	19	1.94
88008--88054	24	2.0	24	87	8	69	25	14	21	38	1.92
88229--88253	12	2.1	12	100	0	50	72	0	28	0	0.86
90549--90758	72	2.9	72	87	4	291	45	17	22	14	1.84
90535--90752	53	4.1	52	87	10	302	46	17	22	13	1.83
90767--90854	19	4.8	19	79	14	114	14	22	14	47	1.81
90748--90854	53	2.0	52	96	1	196	14	24	15	45	1.83
90945--90981	14	2.6	14	91	0	65	45	21	0	32	1.52
92780--92876	20	5.2	20	71	18	91	47	17	23	11	1.80
92778--92842	21	3.1	21	77	4	87	49	15	24	10	1.76
92827--92883	14	3.7	14	72	20	51	43	21	24	10	1.83
92778--92900	33	3.5	33	88	8	156	47	17	23	11	1.80
92917--92973	14	3.7	14	75	20	60	8	24	22	43	1.81
92901--92980	33	2.4	33	95	0	142	8	21	22	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92961--93013	21	2.5	20	82	8	61	15	20	18	45	1.85
93093--93163	33	2.2	33	89	5	108	50	15	22	11	1.75
93544--93716	20	8.6	20	87	3	240	19	20	27	32	1.97
95665--95735	16	4.4	16	90	0	106	18	22	14	45	1.85
95990--96039	23	2.1	24	92	3	84	48	2	4	46	1.32
96611--96635	2	12.5	2	100	0	50	52	0	0	48	1.00
97077--97129	2	26.5	2	84	7	72	50	1	0	47	1.12
97472--97517	21	2.2	21	88	0	65	50	32	0	17	1.47
97478--97519	21	2.0	21	95	0	75	50	30	0	19	1.48
97541--97618	2	39.0	2	84	5	104	51	3	0	44	1.19
97724--97757	15	2.3	15	94	0	59	41	2	5	50	1.42
97724--97793	17	4.4	17	74	15	51	45	4	2	47	1.37
97676--97825	73	2.1	73	89	2	230	44	4	2	48	1.34
97885--98017	18	7.0	18	71	19	74	45	2	4	48	1.35
97814--98012	98	2.0	97	93	0	335	43	4	4	47	1.44
97911--98044	13	10.8	13	67	15	70	42	2	2	52	1.29
99252--99281	2	15.0	2	92	0	51	46	0	3	50	1.18
101189--101280	4	25.0	4	67	16	56	50	0	0	50	1.00
101189--101280	6	16.7	6	75	17	56	50	0	0	50	1.00
101189--101267	36	2.3	35	91	4	124	49	0	0	50	1.00
101305--101341	12	3.0	12	92	4	56	10	16	54	18	1.71
101360--101428	36	1.9	36	90	0	111	17	30	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103316--103341	2	13.0	2	100	0	52	50	0	0	50	1.00
110265--110317	17	3.2	16	86	7	63	58	1	1	37	1.20
114857--114915	29	2.0	29	100	0	118	49	13	13	23	1.78
116578--116670	19	4.7	20	86	5	118	29	24	26	19	1.98
116811--116865	28	2.0	28	88	0	83	49	12	5	32	1.64
119217--119256	21	1.9	21	85	10	55	15	10	37	37	1.80
119378--119455	20	3.9	20	83	5	95	28	25	29	16	1.97
119476--119616	42	3.4	42	88	7	207	22	19	35	21	1.96
119476--119616	21	6.8	20	86	11	169	22	19	35	21	1.96
119499--119586	13	6.9	13	69	23	55	22	20	35	21	1.96
123379--123433	26	2.0	28	89	6	87	47	14	14	23	1.81

Tables:   1

The End!