genome.fa.s646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000646.1 Hibiscus syriacus cultivar Beakdansim tig00001251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107637

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212--379	19	8.6	20	81	10	195	19	19	26	35	1.95
212--440	40	5.8	39	80	10	234	18	18	26	36	1.94
211--402	61	3.2	60	80	8	216	19	18	26	34	1.95
388--440	20	2.7	20	91	5	81	13	18	24	43	1.86
495--547	19	2.8	18	88	11	79	20	15	28	35	1.93
495--546	20	2.7	20	91	8	81	19	15	28	36	1.92
493--562	20	3.5	21	79	14	78	18	17	30	34	1.94
7820--7850	16	1.9	16	93	0	53	16	9	12	61	1.56
16028--16057	14	2.1	14	100	0	60	13	20	0	66	1.24
20636--20692	16	3.4	16	69	21	53	47	8	24	19	1.77
20977--21045	22	3.4	22	69	19	76	50	15	21	11	1.76
20963--21064	39	2.6	39	98	1	197	48	13	21	16	1.81
20999--21062	17	3.5	17	69	19	56	50	10	23	15	1.76
20977--21039	17	3.2	20	66	25	53	49	17	20	12	1.79
23156--23234	23	3.4	23	92	3	133	51	24	20	3	1.63
28954--28991	14	2.7	14	91	0	58	47	23	2	26	1.65
38201--38302	33	3.1	33	88	7	145	18	26	8	46	1.78
45591--45662	30	2.4	30	85	0	90	30	26	22	20	1.98
45649--45773	31	4.0	31	80	9	146	31	20	19	29	1.97
46019--46066	25	1.9	25	87	8	71	45	20	0	33	1.52
49139--49191	5	9.8	5	76	15	52	7	22	50	18	1.72
49132--49192	17	3.3	17	79	20	77	11	22	47	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49139--49191	22	2.4	22	100	0	106	7	22	50	18	1.72
49194--49248	19	2.8	19	78	13	67	27	29	27	16	1.97
56383--56443	24	2.5	24	82	15	81	16	24	42	16	1.88
56390--56427	17	2.2	17	100	0	76	10	23	47	18	1.79
56429--56477	19	2.6	18	90	9	80	26	30	30	12	1.92
56429--56498	9	7.3	9	80	12	68	30	27	28	14	1.95
60279--60314	18	2.1	18	89	5	56	52	8	5	33	1.55
61619--61669	2	25.5	2	100	0	102	49	0	0	50	1.00
65969--66103	73	1.9	71	83	6	173	54	10	9	25	1.64
66078--66153	31	2.6	29	76	14	73	55	10	7	26	1.61
66179--66275	30	3.2	30	73	1	95	50	14	11	23	1.75
66345--66431	32	2.8	31	81	6	86	55	6	9	28	1.57
69588--69624	16	2.3	16	90	9	58	62	0	0	37	0.96
72203--72477	38	7.2	38	72	18	180	40	9	4	45	1.58
72233--72272	16	2.4	17	83	12	55	45	7	5	42	1.54
72253--72472	75	2.9	74	89	6	318	40	9	4	46	1.56
73892--73962	2	35.5	2	100	0	142	50	0	0	49	1.00
76664--76776	58	2.0	57	82	5	138	35	12	2	49	1.54
81351--81540	21	9.3	21	74	6	158	22	18	24	34	1.96
81351--81548	40	4.9	41	76	8	181	22	18	23	34	1.96
81351--81540	61	3.1	61	93	0	317	22	18	24	34	1.96
81991--82047	19	2.7	21	76	15	64	35	28	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82005--82042	19	2.0	19	94	0	67	34	28	5	31	1.80
83857--83901	22	2.0	23	86	8	65	48	13	2	35	1.54
85877--85926	23	2.2	23	96	0	91	34	2	30	34	1.69
86140--86222	22	3.8	22	95	0	139	24	26	22	26	2.00
86494--86535	22	1.9	22	85	9	59	52	0	14	33	1.42
86482--86543	28	2.2	29	77	16	67	50	0	14	35	1.43
87494--87571	41	1.9	41	94	0	138	37	5	20	37	1.75
90757--90807	25	2.0	25	96	0	93	15	21	9	52	1.71
92594--92637	23	2.0	22	86	4	61	11	13	15	59	1.62
92594--92651	21	2.8	20	82	10	62	10	15	18	55	1.68
92985--93041	27	2.1	27	96	0	105	35	3	10	50	1.54
95688--95760	23	3.2	23	92	0	119	38	21	5	34	1.77
97298--97544	120	2.1	120	93	0	422	38	14	14	32	1.87
97133--98030	303	3.0	303	95	0	1609	35	16	14	34	1.88
97601--97844	120	2.0	120	92	0	407	39	15	12	31	1.86
97721--98123	183	2.2	183	96	0	743	34	16	14	34	1.89
99334--99381	3	16.0	3	82	0	60	25	33	4	37	1.75
99335--99398	12	5.3	12	90	0	83	21	32	6	39	1.79
99335--99398	6	10.7	6	86	0	65	21	32	6	39	1.79
100897--102058	200	5.8	200	95	0	2022	31	18	14	35	1.91
102292--102340	19	2.6	19	96	0	89	55	10	2	32	1.45
104123--104188	33	2.0	33	85	5	89	25	45	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104222--104286	21	3.1	21	93	0	103	16	30	10	41	1.83
106471--106937	181	2.6	180	86	4	617	26	16	14	42	1.86

Tables:   1

The End!