Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006460.1 Hibiscus syriacus cultivar Beakdansim tig00015655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66577
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Found at i:533 original size:28 final size:30
Alignment explanation
Indices: 492--548 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
482 CTTTAATCGA
*
492 TTAAATTGT-CAAAATA-AATAAATAAATG
1 TTAAATTGTAAAAAATATAATAAATAAATG
520 TTAAATTGTAAAAAATATTAATAAATAAA
1 TTAAATTGTAAAAAATA-TAATAAATAAA
549 AGAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 6 0.24
31 10 0.40
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (30 bp):
TTAAATTGTAAAAAATATAATAAATAAATG
Found at i:9621 original size:75 final size:73
Alignment explanation
Indices: 9532--9713 Score: 249
Period size: 75 Copynumber: 2.5 Consensus size: 73
9522 GATTATTTTC
* * *
9532 TTTAAAACCAGATTTGTCTCGCTTGAGACAGTTTTTACACGAAA-AAGACATTTCATTTCACTCA
1 TTTAAAACAAGATTTGTCTCACTTGAGACAGTTTTTACACGAAAGAAGACATTTCATTTCAATCA
* *
9596 ATATTTTTT
66 AGA-TTGTT
* *
9605 TTCTCAAAACAAGATTTGTCTCACTTGAGACAATTTTTACTCGAAAGAAGACATTTCATTTCAAT
1 TT-T-AAAACAAGATTTGTCTCACTTGAGACAGTTTTTACACGAAAGAAGACATTTCATTTCAAT
9670 CAAGATTGTT
64 CAAGATTGTT
* *
9680 TTTAAAACAAGATTTATCTCACTTGAGATAGTTT
1 TTTAAAACAAGATTTGTCTCACTTGAGACAGTTT
9714 CCTCGAAACA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
73 30 0.31
74 2 0.02
75 43 0.45
76 21 0.22
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (73 bp):
TTTAAAACAAGATTTGTCTCACTTGAGACAGTTTTTACACGAAAGAAGACATTTCATTTCAATCA
AGATTGTT
Found at i:9769 original size:39 final size:39
Alignment explanation
Indices: 9688--10061 Score: 443
Period size: 39 Copynumber: 9.7 Consensus size: 39
9678 TTTTTAAAAC
* *
9688 AAGA-TTTATCTCACTTGAGATAGTTTC-CTCGAAACAA
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
* * *
9725 AAGATTTTATCTTGCTTGACATAGTTTCACTCGAAACAT
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
* *
9764 AAGATTTTTTCTCGCTTTAGATAGTTTCACTCGAAACAG
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
* * * * *
9803 AAGATTTTTTCTCGCTTAAGATTGTTTCACTCAAAATAG
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
*
9842 AAGA-TTTGTCTCGCTTGAGATAGTTTCACTCGAAA-ATG
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACA-G
* * *
9880 AAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAATAC
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
* *
9919 AAGATTTTATCTTGCTTGAGATAGTTTCACTCGAAATAG
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
* * * * * * *
9958 AATATTTTATCTCACATAAGATAATTTTACTCGACACAG
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
*
9997 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAA
1 AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
** *
10036 AAGA-TTTATCTTACTTGAGATTGTTT
1 AAGATTTTATCTCGCTTGAGATAGTTT
10062 TTCTTAAAAA
Statistics
Matches: 289, Mismatches: 43, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
37 5 0.02
38 71 0.25
39 212 0.73
40 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (39 bp):
AAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAG
Found at i:9865 original size:116 final size:117
Alignment explanation
Indices: 9688--10046 Score: 440
Period size: 116 Copynumber: 3.1 Consensus size: 117
9678 TTTTTAAAAC
* * * * * * *
9688 AAGA-TTTATCTCACTTGAGATAGTTTC-CTCGAAACAAAAGATTTTATCTTGCTTGACATAGTT
1 AAGATTTTATCTCGCTTAAGATAGTTTCACTCAAAATAGAAGATTTTATCTCGCTTGAGATAGTT
* *
9751 TCACTCGAAACATAAGATTTTTTCTCGCTTTAGATAGTTTCACTCGAAACAG
66 TCACTCGAAACATAAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAACAA
* * *
9803 AAGATTTTTTCTCGCTTAAGATTGTTTCACTCAAAATAGAAGA-TTTGTCTCGCTTGAGATAGTT
1 AAGATTTTATCTCGCTTAAGATAGTTTCACTCAAAATAGAAGATTTTATCTCGCTTGAGATAGTT
* *
9867 TCACTCGAAA-ATGAAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAATAC
66 TCACTCGAAACAT-AAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAACAA
* * * * * * * *
9919 AAGATTTTATCTTGCTTGAGATAGTTTCACTCGAAATAGAATATTTTATCTCACATAAGATAATT
1 AAGATTTTATCTCGCTTAAGATAGTTTCACTCAAAATAGAAGATTTTATCTCGCTTGAGATAGTT
* * * *
9984 TTACTCGACACAGAAGATTTTATCTCGCTTGAGATAGTTTCACTCGAAACAA
66 TCACTCGAAACATAAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAACAA
10036 AAGA-TTTATCT
1 AAGATTTTATCT
10047 TACTTGAGAT
Statistics
Matches: 209, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
115 6 0.03
116 127 0.61
117 75 0.36
118 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (117 bp):
AAGATTTTATCTCGCTTAAGATAGTTTCACTCAAAATAGAAGATTTTATCTCGCTTGAGATAGTT
TCACTCGAAACATAAGATTTTATCTCGCTTTAGATAGTTTCACTCGAAACAA
Found at i:10226 original size:59 final size:59
Alignment explanation
Indices: 10092--10247 Score: 172
Period size: 59 Copynumber: 2.6 Consensus size: 59
10082 CATTTGAGGG
* * *
10092 ATTAACATTTCCTTTGCTAGATTCGCAACACTTCGAATCATCAACGCCTCACTTAAGGA
1 ATTAACATTTCCTTTGCTAGATTCACAACACTTCGAATCAGCAACGCCCCACTTAAGGA
* * *
10151 ATTAACATTTCATTTGCTAGATTCACAACACTTTGAATCAGCAATGCCCCAC-T-AGAGA
1 ATTAACATTTCCTTTGCTAGATTCACAACACTTCGAATCAGCAACGCCCCACTTAAG-GA
* * * * * *
10209 GTTTAATATTCCCTTTGCTCGATTCACAATATTTCGAAT
1 -ATTAACATTTCCTTTGCTAGATTCACAACACTTCGAAT
10248 TAGTTTAAGT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
57 2 0.02
58 3 0.04
59 76 0.94
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (59 bp):
ATTAACATTTCCTTTGCTAGATTCACAACACTTCGAATCAGCAACGCCCCACTTAAGGA
Found at i:10352 original size:42 final size:41
Alignment explanation
Indices: 10272--10412 Score: 183
Period size: 42 Copynumber: 3.4 Consensus size: 41
10262 CGGGTCATCA
**
10272 ATAAGTCTTTCAAGCATGATCTTAAATCCTTTGGGTAATCT
1 ATAAGTCTTTCAAGCATGATCTTAAATCCTTAAGGTAATCT
* * * *
10313 ATAAGTATTTCGAGCATGATATTTAAATCCTTAATGTAATCT
1 ATAAGTCTTTCAAGCATGAT-CTTAAATCCTTAAGGTAATCT
* * *
10355 ATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCT
1 ATAAGTCTTTCAAGCATGAT-CTTAAATCCTTAAGGTAATCT
10397 ATAAGTCTTTCAAGCA
1 ATAAGTCTTTCAAGCA
10413 AGATGATAAG
Statistics
Matches: 86, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
41 18 0.21
42 68 0.79
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (41 bp):
ATAAGTCTTTCAAGCATGATCTTAAATCCTTAAGGTAATCT
Found at i:10987 original size:16 final size:17
Alignment explanation
Indices: 10966--11002 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
10956 CTCAGACATC
10966 CCCAAACCAA-ACCCGA
1 CCCAAACCAAGACCCGA
10982 CCCAAACCAAGACCCGA
1 CCCAAACCAAGACCCGA
10999 CCCA
1 CCCA
11003 GAATCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.41, C:0.51, G:0.08, T:0.00
Consensus pattern (17 bp):
CCCAAACCAAGACCCGA
Found at i:12414 original size:9 final size:8
Alignment explanation
Indices: 12356--12414 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 8
12346 GTATGTATGT
12356 TTATTTTA
1 TTATTTTA
12364 TTTATTTTA
1 -TTATTTTA
* *
12373 -TGTTGTA
1 TTATTTTA
12380 TT-TTTTA
1 TTATTTTA
12387 TTA-TTTA
1 TTATTTTA
12394 TTATTTTAA
1 TTATTTT-A
12403 TTATGTTTA
1 TTAT-TTTA
12412 TTA
1 TTA
12415 ATTGTTTGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
7 18 0.43
8 4 0.10
9 17 0.40
10 3 0.07
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (8 bp):
TTATTTTA
Found at i:24273 original size:20 final size:20
Alignment explanation
Indices: 24248--24290 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
24238 TCTAAGAGCC
*
24248 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
24268 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
24288 CAT
1 CAT
24291 GTAGTGGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:28598 original size:11 final size:10
Alignment explanation
Indices: 28582--28855 Score: 129
Period size: 11 Copynumber: 27.0 Consensus size: 10
28572 AATAAAATTA
28582 AATATAATACT
1 AATATAATA-T
28593 AATATAATAAT
1 AATATAAT-AT
*
28604 AA-AAATATAT
1 AATATA-ATAT
*
28614 AATATAAAAAT
1 AATAT-AATAT
28625 AATAT-A-AT
1 AATATAATAT
28633 AATATAATA-
1 AATATAATAT
28642 AATA-ATATAT
1 AATATA-ATAT
28652 AAATATATATAT
1 -AATATA-ATAT
28664 ACTATATAATAT
1 A--ATATAATAT
28676 -ATA-AATAT
1 AATATAATAT
28684 -ATAATAATAT
1 AAT-ATAATAT
28694 ATACTATATATAT
1 A-A-TATA-ATAT
28707 AATATAAATAT
1 AATAT-AATAT
28718 AATAT-ATAT
1 AATATAATAT
28727 AA-ATAATAT
1 AATATAATAT
28736 -ATAT-ATAT
1 AATATAATAT
28744 AATATAA-AT
1 AATATAATAT
*
28753 -ATATTATAT
1 AATATAATAT
*
28762 AGTAATAATAT
1 AAT-ATAATAT
28773 -ATATTGAATAT
1 AATA-T-AATAT
*
28784 ATAAATAATAT
1 A-ATATAATAT
28795 -ATAGTAATAAT
1 AATA-TAAT-AT
*
28806 AATA-CATATT
1 AATATAATA-T
28816 AA-ATATATAT
1 AATATA-ATAT
*
28826 ACATATTATAT
1 A-ATATAATAT
28837 AATAT-ATA-
1 AATATAATAT
28845 AATAATAATAT
1 AAT-ATAATAT
28856 GTACTATATA
Statistics
Matches: 210, Mismatches: 12, Indels: 82
0.69 0.04 0.27
Matches are distributed among these distances:
8 30 0.14
9 43 0.20
10 34 0.16
11 66 0.31
12 24 0.11
13 13 0.06
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (10 bp):
AATATAATAT
Found at i:28617 original size:13 final size:13
Alignment explanation
Indices: 28583--28826 Score: 78
Period size: 13 Copynumber: 18.4 Consensus size: 13
28573 ATAAAATTAA
**
28583 ATATAATACTAAT
1 ATATAATAAAAAT
28596 ATAATAATAAAAAT
1 AT-ATAATAAAAAT
28610 ATATAATATAAAAAT
1 ATAT-A-ATAAAAAT
28625 AATATAATAATATAAT
1 -ATATAATAA-A-AAT
*
28641 AAATAATATATAAAT
1 ATATAATA-A-AAAT
* *
28656 ATAT-AT-ATACT
1 ATATAATAAAAAT
28667 ATATAATATATAAAT
1 ATATAATA-A-AAAT
*
28682 ATATAAT-AATAT
1 ATATAATAAAAAT
*
28694 ATACTATATATATAAT
1 ATA-TA-ATA-AAAAT
*
28710 ATA-AAT-ATAAT
1 ATATAATAAAAAT
28721 ATAT-ATAAATAAT
1 ATATAATAAA-AAT
*
28734 ATAT-ATATATAAT
1 ATATAATA-AAAAT
* *
28747 ATA-AAT-ATATT
1 ATATAATAAAAAT
* *
28758 ATATAGTAATAAT
1 ATATAATAAAAAT
* * *
28771 ATATATTGAATAT
1 ATATAATAAAAAT
*
28784 ATA-AAT-AATAT
1 ATATAATAAAAAT
*
28795 ATAGTAATAATAAT
1 ATA-TAATAAAAAT
* * *
28809 ACATATTAAATAT
1 ATATAATAAAAAT
28822 ATATA
1 ATATA
28827 CATATTATAT
Statistics
Matches: 178, Mismatches: 28, Indels: 50
0.70 0.11 0.20
Matches are distributed among these distances:
11 31 0.17
12 14 0.08
13 57 0.32
14 28 0.16
15 32 0.18
16 16 0.09
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (13 bp):
ATATAATAAAAAT
Found at i:28659 original size:2 final size:2
Alignment explanation
Indices: 28608--28897 Score: 172
Period size: 2 Copynumber: 156.5 Consensus size: 2
28598 AATAATAAAA
* * *
28608 AT AT AT A- AT AT AA AA AT A- AT AT A- AT A- AT AT A- AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
28645 A- AT AT AT AA AT AT AT AT AT ACT AT AT A- AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
*
28686 A- AT A- AT AT AT ACT AT AT AT AT A- AT AT AA AT AT A- AT AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
28725 AT AA AT A- AT AT AT AT AT AT A- AT AT AA AT AT AT -T AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
*
28765 A- AT A- AT AT AT AT -T GA- AT AT AT AA AT A- AT AT AT AGT A- AT
1 AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * *
28803 A- AT A- AT AC AT AT -T AA AT AT AT AT AC AT AT -T AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
28840 AT AT AA AT A- AT A- AT AT GT ACT AT AT AT AT AT AT A- AT GT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
28880 -T AT GAT A- AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT A
28898 GCAAAAGGGT
Statistics
Matches: 223, Mismatches: 28, Indels: 74
0.69 0.09 0.23
Matches are distributed among these distances:
1 30 0.13
2 181 0.81
3 12 0.05
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (2 bp):
AT
Found at i:30688 original size:5 final size:5
Alignment explanation
Indices: 30678--30798 Score: 242
Period size: 5 Copynumber: 24.2 Consensus size: 5
30668 GTAATCCTGT
30678 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
30728 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
30778 TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA T
30799 GTTACATAAT
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 116 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:31006 original size:2 final size:2
Alignment explanation
Indices: 30999--31053 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
30989 AAGACTTTCA
30999 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31041 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
31054 GATAATTTTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31390 original size:13 final size:13
Alignment explanation
Indices: 31374--31413 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
31364 ATAATTTTAT
31374 TTTTAAAAATATA
1 TTTTAAAAATATA
31387 TTTTAAAAATATA
1 TTTTAAAAATATA
31400 TTTTAAAAATATA
1 TTTTAAAAATATA
31413 T
1 T
31414 GGTACCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TTTTAAAAATATA
Found at i:31649 original size:2 final size:2
Alignment explanation
Indices: 31642--31690 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
31632 ACCCTCATCA
31642 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31684 AT AT AT A
1 AT AT AT A
31691 AGCTTTGAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:31713 original size:13 final size:13
Alignment explanation
Indices: 31695--31721 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31685 TATATAAGCT
31695 TTGAATTCAACTG
1 TTGAATTCAACTG
31708 TTGAATTCAACTG
1 TTGAATTCAACTG
31721 T
1 T
31722 GGAAATCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGAATTCAACTG
Found at i:41283 original size:2 final size:2
Alignment explanation
Indices: 41276--41309 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
41266 ACAAAATTTA
41276 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41310 TTAAAAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42058 original size:3 final size:3
Alignment explanation
Indices: 42050--42096 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
42040 CCTTTACCTT
42050 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
42097 ATCATATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:42180 original size:18 final size:19
Alignment explanation
Indices: 42159--42197 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
42149 ATAAGAAAAC
42159 TTATTAAATTA-AGTTTTA
1 TTATTAAATTATAGTTTTA
* *
42177 TTATTAATTTATATTTTTA
1 TTATTAAATTATAGTTTTA
42196 TT
1 TT
42198 TGATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TTATTAAATTATAGTTTTA
Found at i:42409 original size:60 final size:60
Alignment explanation
Indices: 42334--42472 Score: 174
Period size: 60 Copynumber: 2.3 Consensus size: 60
42324 AAAAAAAGAG
* * * * *
42334 TAAAAGTATAC-AAATGGTCCTCCGATTATA-AGATTCTATTTTGTTGAGTCCCCCGACTAT
1 TAAAAGT-TACAAAATGGTCCTCCAACTATAGAGAGT-TACTTTGTTGAGTCACCCGACTAT
* * *
42394 TAAAAGTTACAAAATGGTCCTCTAACTATAGAGAGTTGCTTTGTTGAGTCACTCGACTAT
1 TAAAAGTTACAAAATGGTCCTCCAACTATAGAGAGTTACTTTGTTGAGTCACCCGACTAT
42454 TAAAAGTTACAAAATGGTC
1 TAAAAGTTACAAAATGGTC
42473 AACCGACTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
59 3 0.04
60 62 0.90
61 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (60 bp):
TAAAAGTTACAAAATGGTCCTCCAACTATAGAGAGTTACTTTGTTGAGTCACCCGACTAT
Found at i:42578 original size:18 final size:18
Alignment explanation
Indices: 42555--42589 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
42545 ACATGATGAC
42555 TGAGATT-TGATAATCATT
1 TGAGATTATGAT-ATCATT
42573 TGAGATTATGATATCAT
1 TGAGATTATGATATCAT
42590 ATTTTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (18 bp):
TGAGATTATGATATCATT
Found at i:45062 original size:52 final size:52
Alignment explanation
Indices: 44929--45443 Score: 931
Period size: 52 Copynumber: 9.8 Consensus size: 52
44919 TCTTAAAAAC
*
44929 TAAAAAAGTCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
44981 TAAAAAAAAGTCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 T-AAAAAAA-TCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
45035 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
*
45087 TAAAAAAGTCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
45139 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
45191 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
*
45243 TAAAAAAGTCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
*
45295 TAAAAAAGTCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
*
45347 TAAAAAAAAGTTAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
1 T-AAAAAAA-TCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
*
45401 TAAAAAAAGTTAAATTCAATAATTAAATGTTATCTTATCCCTA
1 TAAAAAAA-TCAAATTCAATAATTAAATGTTATCTTATCCCTA
45444 CTGAAATTTA
Statistics
Matches: 453, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
52 303 0.67
53 61 0.13
54 89 0.20
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.38
Consensus pattern (52 bp):
TAAAAAAATCAAATTCAATAATTAAATGTTATCTTATCCCTATTAAAATTAT
Found at i:45900 original size:4 final size:4
Alignment explanation
Indices: 45891--45931 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
45881 CAAAATTTTT
45891 TTAA TTAA TT-A TTAA -T-A TATAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA T-TAA TTAA TTAA TTAA TTAA TTA
45932 CTACAGAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 1 0.03
3 4 0.12
4 26 0.79
5 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
TTAA
Found at i:46464 original size:47 final size:47
Alignment explanation
Indices: 46410--46504 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
46400 TGGATGATTA
* * * * *
46410 TGACTAATTGTAGGTCATCAGGTCAAATTAATTTAGTAGTCTGATCT
1 TGACTAATTGTAGGTCAACAGGTCAAATAAATCTAATAGTATGATCT
46457 TGACTAATTGTAGGTCAACAGGTCAAATAAATCTAATAGTATGATCT
1 TGACTAATTGTAGGTCAACAGGTCAAATAAATCTAATAGTATGATCT
46504 T
1 T
46505 ATATTTCGCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (47 bp):
TGACTAATTGTAGGTCAACAGGTCAAATAAATCTAATAGTATGATCT
Found at i:47397 original size:15 final size:15
Alignment explanation
Indices: 47377--47526 Score: 255
Period size: 15 Copynumber: 10.0 Consensus size: 15
47367 TAATAAGGTT
*
47377 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
47392 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
47407 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
47422 ATTTATTATAAAATA
1 ATTTATTATAAAATA
47437 ATTTATTATAAAATA
1 ATTTATTATAAAATA
47452 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
47467 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
47482 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
47497 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
*
47512 AATTATTATAAAATA
1 ATTTATTATAAAATA
47527 TGGATTGATT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 127 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTATTATAAAATA
Found at i:47413 original size:30 final size:30
Alignment explanation
Indices: 47377--47526 Score: 282
Period size: 30 Copynumber: 5.0 Consensus size: 30
47367 TAATAAGGTT
47377 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
47407 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
47437 ATTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
47467 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
47497 ATTTATTTTAAAATAAATTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
47527 TGGATTGATT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 117 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTTATTTTAAAATAATTTATTATAAAATA
Found at i:47554 original size:36 final size:32
Alignment explanation
Indices: 47497--47631 Score: 110
Period size: 32 Copynumber: 4.4 Consensus size: 32
47487 TTATAAAATA
47497 ATTTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTT-AAATAAATTA-T-T--AATATGGATTG
* *
47534 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAAATTATTAATATGGATTG
47566 ATTTA-TTT---T--A--A--AATATGGATTG
1 ATTTATTTTAAATAAATTATTAATATGGATTG
* * *
47588 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAAATTATTAATATGGATTG
47620 ATTTATTTTAAA
1 ATTTATTTTAAA
47632 ATATGGATTG
Statistics
Matches: 81, Mismatches: 7, Indels: 25
0.72 0.06 0.22
Matches are distributed among these distances:
22 15 0.19
23 3 0.04
24 1 0.01
26 1 0.01
28 1 0.01
30 1 0.01
31 3 0.04
32 36 0.44
34 1 0.01
35 1 0.01
36 9 0.11
37 9 0.11
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (32 bp):
ATTTATTTTAAATAAATTATTAATATGGATTG
Found at i:47561 original size:32 final size:32
Alignment explanation
Indices: 47525--47631 Score: 135
Period size: 32 Copynumber: 3.7 Consensus size: 32
47515 TATTATAAAA
47525 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
47557 TATGGATTGATTTA-TTT---TAA---A--A-
1 TATGGATTGATTTATTTTAAATAATTTATTAG
47579 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
*
47611 TATAGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
47632 ATATGGATTG
Statistics
Matches: 64, Mismatches: 1, Indels: 20
0.75 0.01 0.24
Matches are distributed among these distances:
22 14 0.22
23 4 0.06
25 1 0.02
26 3 0.05
28 3 0.05
29 1 0.02
31 4 0.06
32 34 0.53
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (32 bp):
TATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:47580 original size:54 final size:54
Alignment explanation
Indices: 47514--47648 Score: 252
Period size: 54 Copynumber: 2.5 Consensus size: 54
47504 TTAAAATAAA
* *
47514 TTATTATAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
47568 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
1 TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
47622 TTATTTTAAAATATGGATTGATTTATT
1 TTATTTTAAAATATGGATTGATTTATT
47649 ATTGTAGTTG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (54 bp):
TTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
Found at i:47582 original size:22 final size:22
Alignment explanation
Indices: 47557--47599 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
47547 AATTTATTAG
47557 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
47579 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
47600 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:47699 original size:32 final size:32
Alignment explanation
Indices: 47658--47855 Score: 214
Period size: 32 Copynumber: 6.7 Consensus size: 32
47648 TATTGTAGTT
*
47658 GTATGGATTGATTTATTTCAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
47690 GTATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
47716 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
47748 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
47771 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
47802 GTATGAATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
47834 GTATAGATTAATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
47856 ATATGGATTG
Statistics
Matches: 140, Mismatches: 8, Indels: 36
0.76 0.04 0.20
Matches are distributed among these distances:
22 14 0.10
23 4 0.03
25 1 0.01
26 21 0.15
27 2 0.01
28 7 0.05
29 1 0.01
30 3 0.02
31 6 0.04
32 81 0.58
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:47702 original size:58 final size:57
Alignment explanation
Indices: 47633--47967 Score: 372
Period size: 54 Copynumber: 6.0 Consensus size: 57
47623 TATTTTAAAA
*
47633 TATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTCAAATAATTTATTAG
1 TATGGATTGATTTATT-TTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
47691 TATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATT-TTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
***
47749 TATGGATTGATTTA-TTT-TA-AAATATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
* * * * * * * *
47803 TATGAATTGATTTATTTTAAATAATT-TATTTGTATAGA-TTAATTT--AT--TTTA-AAA
1 TATGGATTGATTTATTTT--GTAGTTGTA--TGGATTGATTTATTTTAAATAATTTATTAG
47857 TATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATT-TTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
* ***
47915 TATCGATTGATTTA-TTT-TA-AAATATGGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTA
47968 TTGTAGTTGT
Statistics
Matches: 238, Mismatches: 24, Indels: 34
0.80 0.08 0.11
Matches are distributed among these distances:
52 6 0.03
53 10 0.04
54 94 0.39
55 15 0.06
56 4 0.02
57 8 0.03
58 89 0.37
59 6 0.03
60 6 0.03
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.53
Consensus pattern (57 bp):
TATGGATTGATTTATTTTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:47763 original size:224 final size:220
Alignment explanation
Indices: 47525--47967 Score: 640
Period size: 224 Copynumber: 2.0 Consensus size: 220
47515 TATTATAAAA
** ** * *
47525 TATGGATTGATTTATTTT-AAATAATTTATTAGTATGGA-TTGATTTATTTTA-AAATATGGATT
1 TATGGATTGATTTATTTTAAAAT-ATGGATT-G-ATGGATTTGAAATAATTTATAAATATGAATT
*
47587 GATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTATT
63 GATTTATTTTAAATAATTTATTAGTATAGATTAATTTATTTTAAAATATGGATTGATTTATTATT
* ***
47652 GTAGTTGTATGGATTGATTTATTTCAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTG
128 GTAGTTGTATGGATTGATTTATTTCAAATAATTTATTAGTATCGATTGATTTA-T-TT-TA-AAA
47717 TATGGATTGATTTATTTTAAATAATTTATTAG
189 TATGGATTGATTTATTTTAAATAATTTATTAG
** * * *
47749 TATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGAT
1 TATGGATTGATTTATTTTAAAATATGGATTGATGGATTTGAAATAATTTATAAATATGAATTGAT
*
47814 TTATTTTAAATAATTTATTTGTATAGATTAATTTATTTTAAAATATGGATTGATTTATTATTGTA
66 TTATTTTAAATAATTTATTAGTATAGATTAATTTATTTTAAAATATGGATTGATTTATTATTGTA
*
47879 GTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGAT
131 GTTGTATGGATTGATTTATTTCAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGAT
47944 TGATTTATTTTAAATAATTTATTA
196 TGATTTATTTTAAATAATTTATTA
47968 TTGTAGTTGT
Statistics
Matches: 198, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
220 31 0.16
221 2 0.01
222 5 0.03
223 11 0.06
224 145 0.73
225 4 0.02
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (220 bp):
TATGGATTGATTTATTTTAAAATATGGATTGATGGATTTGAAATAATTTATAAATATGAATTGAT
TTATTTTAAATAATTTATTAGTATAGATTAATTTATTTTAAAATATGGATTGATTTATTATTGTA
GTTGTATGGATTGATTTATTTCAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGAT
TGATTTATTTTAAATAATTTATTAG
Found at i:47774 original size:22 final size:22
Alignment explanation
Indices: 47749--47791 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
47739 AATTTATTAG
47749 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
47771 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
47792 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:47777 original size:112 final size:110
Alignment explanation
Indices: 47602--47967 Score: 330
Period size: 112 Copynumber: 3.4 Consensus size: 110
47592 ATTTTAAATA
* * * ***
47602 ATTTATTAGTATAGATTGATTTATTTT-AA-AA--TA-T-GGATTGATTTATTATTGTAGTTGTA
1 ATTTATT-GTATGGATTGATTTATTTTAAATAATTTATTAGGATGGATTGATTATTGTAGAAATA
*
47661 TGGATTGATTTATTTCAAATAATTTATTAGTATGGATTGATTTATT
65 TGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT
* *
47707 ATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAA
1 ATT-TA-TTGTATGGATTGATTTATTTTAAATAATTTATTAGGATGGATTGA-TTATTGTAGAAA
*
47771 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAT
63 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA---T---T
* * * * ***
47825 AATTTATTTGTATAGATTAATTTATTTT-AA-AA--TA-T-GGATTGATTTATTATTGTAGTTGT
1 -ATTTA-TTGTATGGATTGATTTATTTTAAATAATTTATTAGGATGGATTGATTATTGTAGAAAT
*
47884 ATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTA-T
64 ATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT
***
47930 -TTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
1 ATTTATTGTATGGATTGATTTATTTTAAATAATTTATTA
47968 TTGTAGTTGT
Statistics
Matches: 211, Mismatches: 27, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
102 16 0.08
103 6 0.03
104 2 0.01
105 4 0.02
106 22 0.10
107 5 0.02
108 2 0.01
110 2 0.01
111 8 0.04
112 104 0.49
113 8 0.04
114 2 0.01
115 1 0.00
116 2 0.01
117 2 0.01
118 22 0.10
119 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (110 bp):
ATTTATTGTATGGATTGATTTATTTTAAATAATTTATTAGGATGGATTGATTATTGTAGAAATAT
GGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT
Found at i:47799 original size:14 final size:14
Alignment explanation
Indices: 47780--47855 Score: 62
Period size: 18 Copynumber: 4.9 Consensus size: 14
47770 ATATGGATTG
47780 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
47794 ATTTATTAGTATGAATTG
1 ATTTATT--T-T-AAATA
47812 ATTTATTTTAAATA
1 ATTTATTTTAAATA
47826 ATTTATTTGTATAGATTA
1 ATTTATTT-TA-A-A-TA
47844 ATTTATTTTAAA
1 ATTTATTTTAAA
47856 ATATGGATTG
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
14 18 0.36
15 4 0.08
16 4 0.08
17 4 0.08
18 20 0.40
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:47888 original size:192 final size:189
Alignment explanation
Indices: 47525--47898 Score: 526
Period size: 192 Copynumber: 1.9 Consensus size: 189
47515 TATTATAAAA
47525 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
* *
47590 TTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTA
66 TTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATAGATTAATTATTGTA
*** *
47655 GTTGTATGGATTGATTTATTTCAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTG
131 GAAATATGGATTGATTTATTT--AAT-ATGTATTAGTATGGATTGATTTATTATTGTAGTTG
47717 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
*
47782 TTATTTTAAATAATTTATTAGTAT-GAATTGATTTATTTTAAATAATTTATTTGTATAGATTAAT
66 TTATTTTAAATAATTTATTAGTATAG-ATTGATTTATTTT-AA-AA--TA--TGGATAGATTAA-
*
47846 TTATTTTA-AAATATGGATTGATTTA-TT-AT-TGTAGTT-GTATGGATTGATTTATT
123 TTATTGTAGAAATATGGATTGATTTATTTAATATGTA-TTAGTATGGATTGATTTATT
47899 TTAAATAATT
Statistics
Matches: 165, Mismatches: 8, Indels: 18
0.86 0.04 0.09
Matches are distributed among these distances:
191 1 0.01
192 122 0.74
193 4 0.02
194 4 0.02
196 2 0.01
197 2 0.01
198 23 0.14
199 7 0.04
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (189 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
TTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATAGATTAATTATTGTA
GAAATATGGATTGATTTATTTAATATGTATTAGTATGGATTGATTTATTATTGTAGTTG
Found at i:49548 original size:173 final size:173
Alignment explanation
Indices: 49308--49634 Score: 582
Period size: 173 Copynumber: 1.9 Consensus size: 173
49298 GGACATGCCA
*
49308 ATGTAACATGTGTCATGATCATATATTAACATGTGTCACCTATTGATTGTATGGTTAATTTATTA
1 ATGTAACATGTGTCATGATCATATATTAACATATGTCACCTATTGATTGTATGGTTAATTTATTA
* *
49373 AATAAAATTAATATTAGGACTAAGTTGATTAAATGTATAAGTATTGAGGATCAAATATGTAATTA
66 AATAAAATTAATATTAGGACTAAGTTGATTAAATGTACAAGTATTGAGGATCAAATATATAATTA
*
49438 AACTAATTTTATTAATTGTTACGTTGGAGTTGACACAAGTCAG
131 AACTAATTTTATTAATTGTCACGTTGGAGTTGACACAAGTCAG
*
49481 ATGTAACATGTGTCATGATCATATATTAACATATGTCACCTCTTGATTGTATGGTTAATTTATTA
1 ATGTAACATGTGTCATGATCATATATTAACATATGTCACCTATTGATTGTATGGTTAATTTATTA
*
49546 AATAAAATTAATATTAGGACTAAGTTGATTAAATGTACAAGTATTGAGGATGAAATATATAATTA
66 AATAAAATTAATATTAGGACTAAGTTGATTAAATGTACAAGTATTGAGGATCAAATATATAATTA
* *
49611 TACTAATTTTGTTAATTGTCACGT
131 AACTAATTTTATTAATTGTCACGT
49635 AAGCAGTTCC
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
173 146 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.39
Consensus pattern (173 bp):
ATGTAACATGTGTCATGATCATATATTAACATATGTCACCTATTGATTGTATGGTTAATTTATTA
AATAAAATTAATATTAGGACTAAGTTGATTAAATGTACAAGTATTGAGGATCAAATATATAATTA
AACTAATTTTATTAATTGTCACGTTGGAGTTGACACAAGTCAG
Found at i:54819 original size:34 final size:34
Alignment explanation
Indices: 54776--54842 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
54766 TCCACACATT
54776 TTAGTGGAGCAGTAAGTGAAAATGAGTTGTCTAC
1 TTAGTGGAGCAGTAAGTGAAAATGAGTTGTCTAC
*
54810 TTAGTGGAGCAGTAAGTGGAAATGAGTTGTCTA
1 TTAGTGGAGCAGTAAGTGAAAATGAGTTGTCTA
54843 TAGCTGTCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.30
Consensus pattern (34 bp):
TTAGTGGAGCAGTAAGTGAAAATGAGTTGTCTAC
Found at i:55109 original size:48 final size:48
Alignment explanation
Indices: 55057--55214 Score: 203
Period size: 48 Copynumber: 3.3 Consensus size: 48
55047 TATCACTCAA
* * *
55057 GGAATATCAAATCTTGAATG-AGAGGGATTTGTTCCACTT-TTGCTGAAG
1 GGAATATCAAATCTTGAA-GAAGAGAGATTTGTTCCGCTTACT-CTGAAG
* *
55105 GGAATATTAAATCTTGAAGAAGAGAGACTTGTTCCGCTTACTCTGAAG
1 GGAATATCAAATCTTGAAGAAGAGAGATTTGTTCCGCTTACTCTGAAG
* * *
55153 GGAATATCAAATTTTGGAGAAGAGAGATATGTTCCGCTTACTCTGAAG
1 GGAATATCAAATCTTGAAGAAGAGAGATTTGTTCCGCTTACTCTGAAG
*
55201 GGAATATCAGATCT
1 GGAATATCAAATCT
55215 GGGGGAATTG
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
47 1 0.01
48 94 0.98
49 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (48 bp):
GGAATATCAAATCTTGAAGAAGAGAGATTTGTTCCGCTTACTCTGAAG
Found at i:55186 original size:96 final size:95
Alignment explanation
Indices: 55034--55207 Score: 221
Period size: 96 Copynumber: 1.8 Consensus size: 95
55024 GAATCAGGGC
* * *
55034 AGACTTGTTCCGCTATCACTCAAGGAATATCAAATCTTGAATGAGAGGGATTTGTTCCACTT-TT
1 AGACTTGTTCCGCTATCACTCAAGGAATATCAAATCTTGAATGAGAGAGATATGTTCCACTTACT
55098 GCTGAAGGGAATATTAAATCTTGAAGAAGAG
66 -CTGAAGGGAATATTAAATCTTGAAGAAGAG
* * *
55129 AGACTTGTTCCGCT-T-ACTCTGAAGGGAATATCAAATTTTGGA-GAAGAGAGATATGTTCCGCT
1 AGACTTGTTCCGCTATCACTC--AA-GGAATATCAAATCTTGAATG-AGAGAGATATGTTCCACT
55191 TACTCTGAAGGGAATAT
62 TACTCTGAAGGGAATAT
55208 CAGATCTGGG
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
93 4 0.06
94 1 0.01
95 17 0.25
96 45 0.66
97 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (95 bp):
AGACTTGTTCCGCTATCACTCAAGGAATATCAAATCTTGAATGAGAGAGATATGTTCCACTTACT
CTGAAGGGAATATTAAATCTTGAAGAAGAG
Found at i:55298 original size:46 final size:47
Alignment explanation
Indices: 55237--55373 Score: 204
Period size: 48 Copynumber: 2.9 Consensus size: 47
55227 ACATTGAATC
* *
55237 GAAGCAGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTG-GA
1 GAAG-AGACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGAGA
55284 GAAGAGACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGAAGA
1 GAAGAGACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTG-AGA
* * *
55332 AAAGAGACATGTTCCGCTTACTCTGAAGGGAATATCAGATCT
1 GAAGAGACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCT
55374 GGGAAAGTTG
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
46 38 0.46
47 4 0.05
48 41 0.49
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (47 bp):
GAAGAGACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGAGA
Found at i:55373 original size:159 final size:161
Alignment explanation
Indices: 55082--55433 Score: 534
Period size: 159 Copynumber: 2.2 Consensus size: 161
55072 GAATGAGAGG
* *
55082 GATTTGTTCCACTT-TTGCTGAAGGGAATATTAAATCTTGAAGAAGAGAGACTTGTTCCGCTTAC
1 GATTTGTTCCACTTACT-CTGAAGGGAATATCAAATCTTGAAGAAGAGAGACTTGTTCCGCTTAC
* * * *
55146 TCTGAAGGGAATATCAAATTTTGGAGAAGAGAGATATGTTCCGCTTACTCTGAAGGGAATATCAG
65 TCTGAAGGGAATATCAAATCTTGAAGAAAAGAGACATGTTCCGCTTACTCTGAAGGGAATATCAG
*
55211 ATCTGGGGGAA-TTGAT-ACATTGAATCGAAGCA
130 ATCT-GGGAAAGTTGATCA-ATTGAATCGAAGCA
*
55243 GATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAG-A-AGAGACTTGTTCCGCTTACT
1 GATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGAAGAAGAGAGACTTGTTCCGCTTACT
55306 CTGAAGGGAATATCAAATCTTGAAGAAAAGAGACATGTTCCGCTTACTCTGAAGGGAATATCAGA
66 CTGAAGGGAATATCAAATCTTGAAGAAAAGAGACATGTTCCGCTTACTCTGAAGGGAATATCAGA
*
55371 TCTGGGAAAGTTGATCAATTGAATCGAAGTA
131 TCTGGGAAAGTTGATCAATTGAATCGAAGCA
* * *
55402 GACTTATTCCACTTACTCTGAAGAGAATATCA
1 GATTTGTTCCACTTACTCTGAAGGGAATATCA
55434 TATATGGGGA
Statistics
Matches: 176, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
158 5 0.03
159 131 0.74
160 2 0.01
161 37 0.21
162 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (161 bp):
GATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGAAGAAGAGAGACTTGTTCCGCTTACT
CTGAAGGGAATATCAAATCTTGAAGAAAAGAGACATGTTCCGCTTACTCTGAAGGGAATATCAGA
TCTGGGAAAGTTGATCAATTGAATCGAAGCA
Found at i:55419 original size:65 final size:64
Alignment explanation
Indices: 55343--55563 Score: 334
Period size: 65 Copynumber: 3.4 Consensus size: 64
55333 AAGAGACATG
* * * * *
55343 TTCCGCTTACTCTGAAGGGAATATCAGATCTGGGAAAGTTGATCAATTGAATCGAAGTAGACTTA
1 TTCCACTTACTCTGAAGGGAATATCATATATGGGGAAGTTGATC-ATTGAATCGAAGCAGACTTA
*
55408 TTCCACTTACTCTGAAGAGAATATCATATATGGGGAAGTTGATTCATTGAATCGAAGCAGACTTA
1 TTCCACTTACTCTGAAGGGAATATCATATATGGGGAAGTTGA-TCATTGAATCGAAGCAGACTTA
* * *
55473 TTCCACTTACTCTGAAGGGAATATCATATATGGGGAAGTTGATCCATTGAATCAAAGCAAACTTG
1 TTCCACTTACTCTGAAGGGAATATCATATATGGGGAAGTTGAT-CATTGAATCGAAGCAGACTTA
55538 TTCCACTTACTCTGAAGGGAATATCA
1 TTCCACTTACTCTGAAGGGAATATCA
55564 AATCTTGGAG
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
64 1 0.01
65 141 0.98
66 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (64 bp):
TTCCACTTACTCTGAAGGGAATATCATATATGGGGAAGTTGATCATTGAATCGAAGCAGACTTA
Found at i:55589 original size:48 final size:48
Alignment explanation
Indices: 55533--55708 Score: 273
Period size: 48 Copynumber: 3.6 Consensus size: 48
55523 ATCAAAGCAA
*
55533 ACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAG
1 ACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAG
*
55581 ACTTGTTCCGCTTACCCTGAAGGGAATATCAAATCTTTGGAGGAA-AGAG
1 ACTTGTTCCGCTTACTCTGAAGGGAATATCAAATC-TTGGA-GAAGAGAG
* * *
55630 ACCTATTCCGCTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAG
1 ACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAG
*
55678 ACATGTTCCGCTTACTCTGAAGGGAATATCA
1 ACTTGTTCCGCTTACTCTGAAGGGAATATCA
55709 TATTTGGGGA
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 3 0.03
48 70 0.60
49 41 0.35
50 3 0.03
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (48 bp):
ACTTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAG
Found at i:56950 original size:9 final size:9
Alignment explanation
Indices: 56897--57052 Score: 108
Period size: 9 Copynumber: 18.1 Consensus size: 9
56887 TTGAACCCTT
*
56897 ATTTTATTTT
1 ATTTT-TTTC
56907 ATTTTCTTTC
1 ATTTT-TTTC
56917 A--TTTTTC
1 ATTTTTTTC
56924 ATTTTTCTTTC
1 A-TTTT-TTTC
56935 A-TTTTTTC
1 ATTTTTTTC
56943 ATTTTTTT-
1 ATTTTTTTC
56951 ATTTTTTTC
1 ATTTTTTTC
56960 A----TTTC
1 ATTTTTTTC
56965 ATTTTTTTC
1 ATTTTTTTC
56974 ATTTCATTTT-
1 ATTT--TTTTC
*
56984 -TTTCATTTC
1 ATTT-TTTTC
56993 ATTTTTTTC
1 ATTTTTTTC
57002 A-TTTTTTC
1 ATTTTTTTC
57010 ATTTTTTT-
1 ATTTTTTTC
57018 ACTTTTTTT-
1 A-TTTTTTTC
57027 ATTTTTTTC
1 ATTTTTTTC
*
57036 ATTTTCTT-
1 ATTTTTTTC
57044 -TTTTTTTC
1 ATTTTTTTC
57052 A
1 A
57053 GGCGAAATAC
Statistics
Matches: 120, Mismatches: 7, Indels: 39
0.72 0.04 0.23
Matches are distributed among these distances:
5 5 0.04
7 11 0.09
8 34 0.28
9 47 0.39
10 14 0.12
11 9 0.08
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTTTTC
Found at i:56993 original size:76 final size:75
Alignment explanation
Indices: 56908--57049 Score: 200
Period size: 76 Copynumber: 1.9 Consensus size: 75
56898 TTTTATTTTA
56908 TTTTCTTTCATTTTTCATT-TTTCTTTCATTTTTTCA-TTTTTTTATTTTTTTCA-TTTCATTTT
1 TTTTCTTTCATTTTT--TTATTT-TTTCATTTTTTCACTTTTTTTATTTTTTTCATTTTCATTTT
56970 TTTCATTTCATTT
63 TTTCATTTCATTT
* *
56983 TTTTCATTTCATTTTTTTCATTTTTTCATTTTTTTACTTTTTTTATTTTTTTCATTTTCTTTTTT
1 TTTTC-TTTCATTTTTTT-ATTTTTTCATTTTTTCACTTTTTTTATTTTTTTCATTTTCATTTTT
57048 TT
64 TT
57050 TCAGGCGAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
74 2 0.03
75 17 0.28
76 30 0.50
77 11 0.18
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (75 bp):
TTTTCTTTCATTTTTTTATTTTTTCATTTTTTCACTTTTTTTATTTTTTTCATTTTCATTTTTTT
CATTTCATTT
Found at i:57011 original size:67 final size:70
Alignment explanation
Indices: 56898--57030 Score: 195
Period size: 67 Copynumber: 1.9 Consensus size: 70
56888 TGAACCCTTA
*
56898 TTTTATTTTATTTTCTTTCATTTTTCATTTTTCTTTCATTTTTTCATTTTTTTA-TTTTTTTCAT
1 TTTTATTTCATTTTCTTTCA-TTTTCATTTTTCTTTCATTTTTTCATTTTTTTACTTTTTTT-AT
56962 TTCATTT
64 TTCATTT
56969 TTTTCATTTCATTTT-TTTCA-TTTCA-TTTT-TTTCATTTTTTCATTTTTTTACTTTTTTTATT
1 TTTT-ATTTCATTTTCTTTCATTTTCATTTTTCTTTCATTTTTTCATTTTTTTACTTTTTTTATT
57030 T
65 T
57031 TTTTCATTTT
Statistics
Matches: 59, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
67 25 0.42
68 11 0.19
69 5 0.08
71 9 0.15
72 9 0.15
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (70 bp):
TTTTATTTCATTTTCTTTCATTTTCATTTTTCTTTCATTTTTTCATTTTTTTACTTTTTTTATTT
CATTT
Found at i:57014 original size:14 final size:15
Alignment explanation
Indices: 56898--57048 Score: 126
Period size: 14 Copynumber: 10.3 Consensus size: 15
56888 TGAACCCTTA
56898 TTTT-ATTTT-ATTT
1 TTTTCATTTTCATTT
56911 TCTTTCATTTTTCA--T
1 T-TTTCA-TTTTCATTT
56926 TTTTC--TTTCA-TT
1 TTTTCATTTTCATTT
*
56938 TTTTCATTTTTTTATTT
1 TTTTCA--TTTTCATTT
56955 TTTTCA-TTTCATTT
1 TTTTCATTTTCATTT
56969 TTTTCA-TTTCATTT
1 TTTTCATTTTCATTT
56983 TTTTCA-TTTCATTT
1 TTTTCATTTTCATTT
56997 TTTTCATTTTTTCATTT
1 TTTTCA--TTTTCATTT
* *
57014 TTTTACTTTTTTTATTT
1 TTTT-C-ATTTTCATTT
57031 TTTTCATTTTC-TTT
1 TTTTCATTTTCATTT
57045 TTTT
1 TTTT
57049 TTCAGGCGAA
Statistics
Matches: 117, Mismatches: 6, Indels: 29
0.77 0.04 0.19
Matches are distributed among these distances:
11 5 0.04
12 6 0.05
13 1 0.01
14 55 0.47
15 7 0.06
16 9 0.08
17 33 0.28
18 1 0.01
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCATTTTCATTT
Found at i:60487 original size:2 final size:2
Alignment explanation
Indices: 60480--60505 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60470 AAACGAGATG
60480 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60506 CAAATATAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60563 original size:4 final size:4
Alignment explanation
Indices: 60546--60585 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
60536 AAGAATGAAT
60546 AATA ATATA TAATA AATA AATA AATA AATA AATA AA-A AAT
1 AATA A-ATA -AATA AATA AATA AATA AATA AATA AATA AAT
60586 GCAATGGACG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 23 0.70
5 6 0.18
6 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:62132 original size:24 final size:24
Alignment explanation
Indices: 62100--62154 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
62090 GTGAAGTGGC
* *
62100 CTACCTCATCCATATCTTTCTTAA
1 CTACCTCATCCACATCTTCCTTAA
62124 CTACCTCATCCACATCTTCCTTAA
1 CTACCTCATCCACATCTTCCTTAA
*
62148 CAACCTC
1 CTACCTC
62155 TGAACTCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.40, G:0.00, T:0.35
Consensus pattern (24 bp):
CTACCTCATCCACATCTTCCTTAA
Done.