genome.fa.s6461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006461.1 Hibiscus syriacus cultivar Beakdansim tig00015656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132878

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5183--5251	29	2.4	29	82	4	77	34	15	5	43	1.71
10105--10260	43	3.6	44	83	1	163	20	22	23	33	1.97
10105--10292	87	2.1	87	80	2	198	20	22	23	34	1.97
12435--12719	43	6.6	43	90	0	417	18	22	25	33	1.97
13748--13794	18	2.6	18	86	6	60	25	23	8	42	1.82
24321--24354	14	2.5	13	90	4	50	20	0	2	76	0.92
25670--25700	2	15.5	2	100	0	62	48	0	0	51	1.00
25930--25974	13	3.4	14	85	11	51	77	0	11	11	0.99
25955--26041	5	17.8	5	71	19	51	75	2	19	2	1.01
25940--26003	27	2.4	27	86	5	85	78	1	15	4	1.00
25940--26047	11	10.9	10	70	24	61	75	2	17	3	1.06
25955--26016	27	2.3	27	88	0	88	75	1	20	1	0.97
25987--26047	31	1.9	33	83	12	83	73	3	21	1	1.06
28021--28276	55	4.6	55	72	12	157	28	11	18	41	1.86
29763--30039	91	3.0	91	82	3	333	39	16	19	24	1.92
32901--32948	25	2.0	24	87	4	69	25	4	16	54	1.60
44283--44357	33	2.2	34	83	9	91	74	0	14	10	1.07
44311--44360	8	6.9	8	76	21	56	76	0	10	14	1.03
45365--45782	55	7.7	55	90	4	625	29	15	27	28	1.96
47872--47919	25	2.0	24	87	4	69	25	4	16	54	1.60
53254--53306	27	2.0	26	85	10	72	30	26	16	26	1.97
55062--55094	18	1.9	17	88	11	50	42	3	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56238--56277	12	3.2	12	82	3	53	57	12	0	30	1.36
56870--56929	13	4.8	13	76	15	72	26	0	1	71	0.95
56870--56933	20	3.3	20	73	22	66	26	0	1	71	0.94
56860--56933	37	2.0	37	89	0	112	25	0	4	70	1.05
56874--56916	16	2.7	16	88	0	59	25	0	2	72	0.97
57179--57226	8	6.0	8	80	0	51	72	2	0	25	0.95
57179--57226	16	3.0	16	90	0	69	72	2	0	25	0.95
60984--61026	18	2.4	18	96	0	77	32	6	25	34	1.83
63091--63129	12	3.2	12	81	0	51	56	12	0	30	1.37
65463--65544	32	2.6	31	81	11	87	39	9	17	34	1.82
65721--65788	32	2.1	32	91	5	111	32	25	13	29	1.93
68763--68824	32	1.9	32	90	6	99	61	9	11	17	1.56
71646--71683	3	12.3	3	88	5	58	63	0	0	36	0.95
72975--73028	9	5.9	9	80	10	56	74	5	1	18	1.11
72988--73025	16	2.2	16	90	9	58	76	5	0	18	0.97
74909--74939	5	6.0	5	96	3	53	41	0	0	58	0.98
82583--82628	3	14.7	3	86	8	65	63	4	0	32	1.14
82813--82909	41	2.4	41	92	0	158	24	20	27	26	1.99
86701--86746	17	2.6	18	89	3	67	60	8	17	13	1.56
90997--91134	3	46.7	3	88	5	192	63	0	1	35	1.04
91015--91167	68	2.2	68	97	2	290	60	0	2	37	1.11
93424--93456	15	2.3	14	94	5	57	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93405--93461	23	2.5	22	75	10	53	61	1	0	36	1.07
95186--95279	43	2.2	42	86	1	125	25	2	28	43	1.66
95239--95307	28	2.4	28	87	2	93	26	1	28	43	1.63
97519--97581	23	2.7	23	87	0	81	33	7	22	36	1.83
97519--97562	11	3.9	11	76	5	52	29	6	25	38	1.81
97999--98441	235	1.9	235	82	2	559	35	13	14	37	1.85
98983--99023	2	21.0	2	90	5	66	46	0	2	51	1.14
99564--99611	3	16.7	3	87	8	64	64	0	4	31	1.12
99901--100137	40	5.5	42	75	14	202	20	18	36	24	1.95
99800--100155	131	2.7	132	87	2	464	22	18	34	25	1.96
100257--100404	66	2.3	64	86	2	197	43	16	10	29	1.81
100564--100627	32	2.0	32	84	0	83	28	32	14	25	1.94
101673--101728	25	2.2	25	84	12	71	5	14	3	76	1.09
109801--109840	21	1.9	21	89	0	62	25	40	25	10	1.86
112233--112426	61	3.2	61	69	21	197	40	11	8	39	1.72
112219--112472	122	2.1	122	99	0	499	41	12	7	38	1.70
115331--115584	30	8.6	30	73	7	146	56	10	13	19	1.65
115333--115556	30	7.6	30	74	6	174	57	10	12	20	1.63
118349--118908	282	2.0	282	90	2	883	30	17	16	34	1.93
121208--121266	29	2.0	29	100	0	118	23	13	13	49	1.78
125060--125201	21	6.8	20	84	11	162	21	35	19	22	1.96
125091--125178	13	6.9	13	70	23	55	21	35	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125060--125201	42	3.4	41	89	5	189	21	35	19	22	1.96
125222--125316	20	4.7	20	89	2	136	17	29	23	29	1.97
125222--125316	41	2.3	40	89	1	136	17	29	23	29	1.97
125061--125316	21	12.7	20	76	15	149	21	32	20	25	1.97
125428--125467	20	1.9	21	85	10	55	37	37	10	15	1.80
126609--126656	19	2.5	20	82	3	62	52	6	12	29	1.63
127883--127943	30	2.1	28	82	8	70	36	6	13	44	1.69
127892--127950	30	2.0	30	90	3	93	35	6	11	45	1.67
128092--128195	21	5.0	21	84	3	122	20	25	25	27	1.99
128092--128195	41	2.5	42	84	3	122	20	25	25	27	1.99
129854--129911	29	2.0	28	96	3	107	24	13	13	48	1.79
132399--132448	25	2.0	25	84	7	66	38	8	2	52	1.43

Tables:   1

The End!