genome.fa.s6462.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006462.1 Hibiscus syriacus cultivar Beakdansim tig00015661_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85683

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2202--2244	20	2.2	20	86	0	59	30	11	20	37	1.89
9892--9926	13	2.7	13	86	0	52	11	25	0	62	1.28
12468--12510	20	2.2	20	86	0	59	30	11	20	37	1.89
12741--12819	27	2.9	27	98	0	149	31	21	21	25	1.98
15191--15247	19	3.0	19	82	5	71	36	10	12	40	1.77
19922--20178	141	1.8	141	89	0	406	37	15	15	31	1.89
25306--25377	23	3.0	24	85	2	101	29	22	26	22	1.99
25508--25564	30	1.9	30	92	0	96	40	19	5	35	1.74
25521--25568	15	3.2	15	84	0	69	39	20	6	33	1.78
25508--25585	30	2.6	30	85	4	95	42	19	6	32	1.76
26220--26270	20	2.6	20	78	3	59	33	25	11	29	1.91
26257--26297	21	2.0	20	90	4	64	36	21	7	34	1.82
31350--31399	23	2.2	23	96	0	91	32	8	20	40	1.81
33079--33275	75	2.6	76	87	4	274	19	24	32	23	1.97
36683--36735	20	2.7	20	96	0	97	62	1	0	35	1.06
38755--38901	76	2.0	74	87	5	215	30	2	8	58	1.41
38875--38984	30	3.6	29	68	17	78	32	0	13	53	1.40
39566--39610	21	2.2	20	88	4	63	20	4	0	75	0.97
46978--47142	76	2.2	75	86	3	233	30	2	9	57	1.43
47790--47829	21	1.9	21	84	0	53	22	5	0	72	1.04
47862--47911	16	3.3	16	82	15	54	36	2	0	62	1.07
48327--48369	4	10.8	4	84	0	59	48	18	2	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48336--48377	20	2.1	20	90	0	66	45	19	4	30	1.71
49025--49085	31	2.0	31	93	0	104	22	6	16	54	1.65
49883--49924	16	2.7	16	96	3	77	71	0	14	14	1.15
50942--50978	19	1.9	19	94	0	65	35	27	16	21	1.94
51452--51537	19	4.2	19	73	16	64	30	29	4	36	1.78
57358--57427	31	2.3	31	87	0	104	30	25	10	34	1.89
59423--59487	31	2.1	31	85	0	85	32	13	29	24	1.94
59431--59497	31	2.2	31	89	2	100	31	13	25	29	1.94
60192--60300	32	3.4	32	82	5	139	21	11	28	38	1.89
60884--60936	18	2.9	18	72	11	54	43	5	0	50	1.25
65918--66043	58	2.2	58	87	8	188	43	10	10	35	1.73
68482--68541	29	2.1	29	93	0	102	23	21	15	40	1.91
68554--68602	23	2.1	23	96	0	89	32	18	14	34	1.91
68639--68681	22	2.0	22	90	0	68	37	18	13	30	1.90
68647--68689	22	2.0	22	90	0	68	34	18	16	30	1.93
71739--71803	17	4.0	17	69	17	57	61	3	0	35	1.12
74860--74891	16	2.0	16	100	0	64	12	6	6	75	1.19
79587--79661	24	3.1	24	74	14	66	44	1	5	49	1.33
79694--79740	24	2.0	23	91	8	76	36	0	6	57	1.24
81043--81073	13	2.4	13	88	0	53	9	6	16	67	1.39
81039--81123	31	2.8	32	82	8	113	10	9	18	61	1.55
81060--81112	21	2.7	20	82	8	56	13	9	18	58	1.61

Tables:   1

The End!