Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006464.1 Hibiscus syriacus cultivar Beakdansim tig00015664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97065

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12287--12313
2
13.5
2
100
0
54
51
0
0
48
1.00
16592--16698
39
2.7
39
81
8
110
48
1
16
32
1.57
18254--18348
36
2.7
36
85
4
122
43
28
1
27
1.62
18832--19040
105
1.9
107
90
4
332
47
8
4
38
1.55
19253--19332
35
2.3
34
89
4
115
28
2
26
42
1.68
21735--22510
81
9.6
81
94
0
1219
37
17
22
22
1.94
23315--23390
29
2.6
31
76
17
83
59
3
0
36
1.16
23535--23816
150
1.9
145
89
3
429
32
14
26
26
1.94
23986--24497
255
2.0
255
95
0
925
24
14
29
31
1.95
28969--29002
16
2.1
16
94
0
59
32
26
8
32
1.87
30005--30034
12
2.6
12
94
5
53
6
10
70
13
1.34
31199--31245
22
2.1
22
84
0
58
14
17
8
59
1.59
31215--31257
22
2.0
22
86
9
61
13
18
6
60
1.55
42317--42377
27
2.3
27
75
16
63
55
1
39
3
1.26
42457--42492
17
2.1
17
100
0
72
16
0
41
41
1.48
42636--42735
30
3.4
30
88
4
141
40
0
14
46
1.44
42677--42731
15
3.6
16
70
20
55
41
0
14
43
1.45
42788--42821
15
2.2
16
94
5
61
38
0
5
55
1.24
43393--43726
49
6.3
49
94
3
398
46
13
0
40
1.46
43391--43579
60
3.2
60
99
0
369
44
14
0
40
1.46
43398--43548
21
7.4
20
66
17
80
45
14
0
39
1.45
43453--43783
109
3.1
103
86
9
447
46
12
0
40
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43661--43790
60
2.2
60
90
4
210
46
13
0
40
1.43
43671--43755
21
4.2
20
66
22
52
48
11
0
40
1.40
46959--47003
21
2.2
21
88
4
65
55
6
0
37
1.26
47296--47357
28
2.1
30
94
5
110
56
12
0
30
1.37
47781--47824
23
1.9
23
95
0
79
27
25
22
25
2.00
47797--47900
32
3.2
32
86
0
136
29
28
24
17
1.97
50002--50039
2
19.0
2
94
0
67
47
0
2
50
1.15
49975--50008
15
2.3
15
85
5
52
41
2
2
52
1.31
50091--50134
2
22.5
2
95
4
81
50
0
0
50
1.00
53585--53644
31
1.9
32
82
3
77
46
10
11
31
1.73
53501--53731
121
1.9
121
82
1
293
44
9
16
30
1.79
55469--55512
16
2.8
16
85
0
52
47
9
2
40
1.48
55474--55512
2
19.5
2
83
0
51
48
7
0
43
1.31
56822--56944
63
1.9
64
85
8
171
43
0
20
35
1.58
57770--57824
20
2.8
20
88
0
83
23
16
23
36
1.94
57861--57901
21
2.0
21
85
0
55
36
9
24
29
1.87
63782--63814
4
8.2
4
100
0
66
51
24
0
24
1.48
63512--63897
115
3.4
110
79
11
392
31
21
16
31
1.95
63671--63897
118
1.9
120
84
3
307
32
22
13
32
1.92
67220--67245
12
2.2
12
100
0
52
0
15
50
34
1.45
69537--69585
21
2.3
21
92
0
80
28
38
10
22
1.87
72798--72912
41
2.8
41
81
4
124
30
20
20
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72933--73059
42
3.0
41
76
10
123
32
22
14
30
1.94
75571--75858
43
6.7
43
86
1
382
26
25
16
31
1.96
75571--75880
85
3.7
85
86
3
412
25
25
16
32
1.96
75571--75857
128
2.2
128
86
3
407
26
25
16
31
1.96
80654--80711
6
9.7
6
92
0
98
32
1
0
65
1.03
82274--82310
15
2.5
15
95
0
65
5
16
70
8
1.30
83651--83734
32
2.7
31
80
15
95
61
1
2
34
1.16
84820--84881
2
31.0
2
100
0
124
50
0
0
50
1.00
85524--85579
28
2.0
28
86
3
78
35
3
7
53
1.46
86886--86932
24
2.0
23
88
12
69
34
2
0
63
1.06

Tables:   1

The End!