Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006465.1 Hibiscus syriacus cultivar Beakdansim tig00015665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109734

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4481--4525
23
2.0
23
86
0
63
40
0
4
55
1.20
9937--9993
21
2.7
21
83
5
71
33
21
22
22
1.97
11254--11336
40
2.1
40
88
4
123
26
19
24
30
1.98
11880--12100
108
2.0
110
97
1
419
49
8
6
35
1.59
12370--12520
65
2.3
65
87
5
209
45
10
1
43
1.47
12778--12812
10
3.5
10
92
7
54
17
0
2
80
0.84
12840--12874
17
2.1
17
88
0
52
42
5
0
51
1.25
12882--12918
19
1.9
19
88
0
56
13
35
16
35
1.88
13604--13685
36
2.3
36
100
0
164
26
0
29
43
1.55
14066--14124
3
20.0
3
85
3
75
30
0
3
66
1.08
20932--20977
9
4.8
10
89
10
69
86
0
13
0
0.56
20932--20977
19
2.4
19
92
0
74
86
0
13
0
0.56
23137--23345
114
1.8
114
90
2
339
32
15
20
32
1.94
24446--24617
74
2.3
75
84
4
213
34
16
19
29
1.94
26632--28307
76
22.1
76
97
0
3093
21
20
21
35
1.96
28474--28512
3
13.0
3
88
0
60
35
0
2
61
1.10
28595--28642
20
2.4
20
100
0
96
22
12
27
37
1.90
31673--31701
2
14.5
2
100
0
58
48
0
0
51
1.00
33617--33732
59
2.0
60
80
1
135
32
22
5
39
1.76
33881--34050
59
2.8
60
81
10
206
41
5
20
32
1.75
37958--37991
14
2.6
13
86
13
52
47
0
0
52
1.00
40212--40260
21
2.5
20
80
9
57
12
44
10
32
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44958--45136
89
2.0
89
97
0
340
29
11
7
51
1.64
47871--47969
50
2.0
50
97
0
189
39
22
4
34
1.73
49986--50067
5
15.2
5
78
14
83
8
20
52
18
1.71
49979--50067
22
4.0
22
98
0
169
10
21
50
17
1.75
50068--50159
10
9.7
9
76
13
69
29
28
26
16
1.97
50094--50160
9
6.8
10
82
14
61
29
25
26
17
1.98
57166--57247
5
15.2
5
78
14
83
8
20
52
18
1.71
57159--57247
22
4.0
22
98
0
169
10
21
50
17
1.75
57248--57340
9
9.7
9
77
11
78
30
27
25
16
1.96
57267--57341
29
2.5
31
89
8
120
29
26
26
17
1.97
57248--57340
19
4.8
19
76
17
75
30
27
25
16
1.96
61201--61335
71
1.9
71
81
6
166
19
9
15
55
1.67
64478--64560
29
2.8
29
92
1
139
43
9
14
32
1.78
69242--69324
29
2.8
29
92
1
139
43
9
14
32
1.78
77201--77382
82
2.2
85
82
8
232
33
19
21
25
1.97
79325--79373
4
12.2
4
88
0
71
51
4
0
44
1.20
79325--79373
6
8.2
6
88
0
71
51
4
0
44
1.20
79325--79373
10
4.9
10
92
0
71
51
4
0
44
1.20
82557--82606
26
1.9
26
91
0
82
32
10
6
52
1.59
84683--84778
49
2.0
49
95
0
174
37
10
9
42
1.71
85186--85240
19
2.9
19
94
0
92
34
23
20
21
1.97
85268--85320
21
2.5
21
100
0
106
28
30
24
16
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85329--85573
21
12.0
21
71
10
159
21
18
23
35
1.95
85354--85570
40
5.3
40
91
3
344
21
17
23
36
1.94
85354--85570
82
2.7
82
92
1
366
21
17
23
36
1.94
86160--86190
6
5.2
6
92
0
53
0
16
45
38
1.47
86343--86375
2
16.5
2
100
0
66
48
0
0
51
1.00
86831--86890
3
20.0
3
100
0
120
66
0
0
33
0.92
88278--88546
138
1.9
138
85
5
375
33
18
23
24
1.97
89103--89286
30
6.1
30
85
7
257
42
8
13
35
1.75
89071--89263
90
2.1
90
99
0
377
40
10
13
34
1.80
92320--92580
130
2.0
128
86
3
362
30
20
14
34
1.93
99564--99683
32
3.8
32
76
10
113
29
15
4
51
1.61
100382--100433
26
2.0
26
84
0
68
15
7
3
73
1.21
103263--103371
24
4.5
24
85
4
128
22
16
19
41
1.90
107934--108034
24
4.3
24
78
12
102
25
17
17
38
1.92

Tables:   1

The End!